PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026723-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 325aa    MW: 36323.6 Da    PI: 7.9117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026723-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd llv +++++G+ +W++++   g+ R+ k+c++rw +yl
  WALNUT_00026723-RA 14 KGPWTPEEDILLVSYIQEHGPANWRAVPTNTGLLRCSKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding49.69.2e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  WALNUT_00026723-RA  67 RGNFTDQEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.306961IPR017930Myb domain
SuperFamilySSF466894.4E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231568IPR009057Homeodomain-like
CDDcd001671.55E-101661No hitNo description
PROSITE profilePS5129424.26262116IPR017930Myb domain
SMARTSM007177.6E-1566114IPR001005SANT/Myb domain
PfamPF002497.7E-1567112IPR001005SANT/Myb domain
CDDcd001671.37E-1069112No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2469117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPANWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLNKKLKKLQ  120
TGLEGHPRDG LSASQKMPRG QWEKRLQTDI HLAKQALREA LSPEKPSYMS GSKSSDVWSN  180
ANPAQSSNYA SSTENISRLL KGWKRSPPKP SETNSVMTQN SLNNMSGTDS VSSDHGTPSW  240
KSNDKDLILP GAFDSLFGFE SFDSSHSDTS QSMSPEATLF QAESKPDSCA QLPFSLLEKW  300
LFDEGASQGK DFLNDITLDD SANLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-241411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295701e-118KP229570.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB14) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812236.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-111MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2I4DYL70.0A0A2I4DYL7_JUGRE; myb-related protein 306-like
STRINGVIT_14s0108g00830.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-107myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]