PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00026705-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 365aa MW: 41332.7 Da PI: 8.1903

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00026705-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.6e-55	19	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL k+v+++++++ ++i evd++k+ePw+Lp k k+k +ekewyfF+ rd+ky+tg r+nrat++gyWka WALNUT_00026705-RA 19 LPPGFRFHPTDEELITHYLFKRVTESSFSA-SAIGEVDLNKSEPWELPcKfaytrKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKA 108 79************************99.88***********65788877777999************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++ +++lvg+kktLvfy+grapkgekt+Wvmheyrle WALNUT_00026705-RA 109 TGKDKEIYR-GRSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 151 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-62	15	175	IPR003441	NAC domain
PROSITE profile	PS51005	59.405	19	175	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	20	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MHEMENFSWV YKEEDQMDLP PGFRFHPTDE ELITHYLFKR VTESSFSASA IGEVDLNKSE 60 PWELPCKFAY TRKAKMGEKE WYFFCVRDRK YPTGLRTNRA TEAGYWKATG KDKEIYRGRS 120 LVGMKKTLVF YRGRAPKGEK TNWVMHEYRL EGKFSVHNLP KTAKNEWVLC RVFQKSSGGK 180 KIHISGIVRL GSFGSELGPS DLPPLTDSSA NIGKTKPFME SAYVPCFSNP ISAQRNQEGM 240 VDSFNNSLYG VPSNPTDILP RIPASSSFYS TQISTIQGNL QFPGCVGMQD PSILWALHGN 300 QGSNLRQSFK TEREIVGVSQ ETAMNTDVIA EISSLVSNLE MDRRSFQEAP STSAGPLDLD 360 NFWNY

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MHEMENFSWV YKEEDQMDLP PGFRFHPTDE ELITHYLFKR VTESSFSASA IGEVDLNKSE  60
PWELPCKFAY TRKAKMGEKE WYFFCVRDRK YPTGLRTNRA TEAGYWKATG KDKEIYRGRS  120
LVGMKKTLVF YRGRAPKGEK TNWVMHEYRL EGKFSVHNLP KTAKNEWVLC RVFQKSSGGK  180
KIHISGIVRL GSFGSELGPS DLPPLTDSSA NIGKTKPFME SAYVPCFSNP ISAQRNQEGM  240
VDSFNNSLYG VPSNPTDILP RIPASSSFYS TQISTIQGNL QFPGCVGMQD PSILWALHGN  300
QGSNLRQSFK TEREIVGVSQ ETAMNTDVIA EISSLVSNLE MDRRSFQEAP STSAGPLDLD  360
NFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	16	181	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	16	181	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	16	181	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	16	181	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	16	181	17	174	NAC domain-containing protein 19
3swm_B	1e-53	16	181	17	174	NAC domain-containing protein 19
3swm_C	1e-53	16	181	17	174	NAC domain-containing protein 19
3swm_D	1e-53	16	181	17	174	NAC domain-containing protein 19
3swp_A	1e-53	16	181	17	174	NAC domain-containing protein 19
3swp_B	1e-53	16	181	17	174	NAC domain-containing protein 19
3swp_C	1e-53	16	181	17	174	NAC domain-containing protein 19
3swp_D	1e-53	16	181	17	174	NAC domain-containing protein 19
4dul_A	1e-53	16	181	14	171	NAC domain-containing protein 19
4dul_B	1e-53	16	181	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809301.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-151	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I4DQ77	0.0	A0A2I4DQ77_JUGRE; NAC domain-containing protein 100-like
STRING	cassava4.1_010528m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-154	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]