PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025170-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 1046aa    MW: 117550 Da    PI: 5.0938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025170-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52641911128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiyk+ePwdL  k  +k++++ewyfFs  dkky +g r nrat++gyWkatgkd
  WALNUT_00025170-RA  64 LAPGFRFHPTDEELVIYYLKRKVDGKPFRI-NAISEVDIYKSEPWDLAdKsGLKTRDQEWYFFSALDKKYGNGARMNRATSKGYWKATGKD 153
                         579***************************.89**************75347788999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v++ ++++vglkktLvf++grap g +t+Wvmheyrl
  WALNUT_00025170-RA 154 RVVHH-GSRKVGLKKTLVFHNGRAPGGMRTNWVMHEYRL 191
                         ***99.99*****************************98 PP
2NAM122.14.8e-3853864620128
                 NAM  20 kkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                          +kv++k++++ + i+ vdiyk+ePwdLp k k+k+++ ewyfFs  d+ky ++ r+nrat++gyWk+tgkd++v++ ++++vg+kktLv+
  WALNUT_00025170-RA 538 DRKVSSKPFRF-DPISVVDIYKSEPWDLPsKsKLKSRDLEWYFFSALDRKYGSSLRTNRATERGYWKTTGKDRPVHQ-NSRTVGMKKTLVY 626
                         68999999999.89**************95247777777*************************************9.999********** PP

                 NAM 109 ykgrapkgektdWvmheyrl 128
                         ++grap+g +++Wvmheyrl
  WALNUT_00025170-RA 627 HNGRAPHGARSNWVMHEYRL 646
                         ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6160211IPR003441NAC domain
PROSITE profilePS5100558.64864211IPR003441NAC domain
PfamPF023659.8E-2766191IPR003441NAC domain
PROSITE profilePS5100542.84518669IPR003441NAC domain
SuperFamilySSF1019411.44E-45538669IPR003441NAC domain
PfamPF023653.5E-15544646IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MEVKKPKKEN NIVPSLPCNR SLALRHRPPS QPRNPSHHSL PEISTMGRDT PALPATPSTA  60
PTALAPGFRF HPTDEELVIY YLKRKVDGKP FRINAISEVD IYKSEPWDLA DKSGLKTRDQ  120
EWYFFSALDK KYGNGARMNR ATSKGYWKAT GKDRVVHHGS RKVGLKKTLV FHNGRAPGGM  180
RTNWVMHEYR LADEELKKAQ DAYVLCRVFH KKNIGPPNSH RYAPFIEEDW DDGTPAFLSG  240
KEARNELVAG HDARAEGDDH DARAEGDGHD ARAEGDDHDA RAEGHDHDAR AEEAGHVACA  300
EKGHGAFVEG NGHCAFVENN YDECVENCQD SFVDGNSVEQ DTQSINEAPR RANEVPRDSQ  360
NALVVCKCEK TDDCRLPYMD NQRPFPLIKY KRRRHYELNS NHSNPSETST RMSQDHGSST  420
TTTAATTLMT TTSTTTTTTA TTRNFLSALV EYSLLESFEP KDSLSVSPEF DPASLDSSVP  480
PSCLKFIQDL QNEIHKISVE RETLKFEMMS AQTMINILQS RIDLLNKENE DLRKSNQDRK  540
VSSKPFRFDP ISVVDIYKSE PWDLPSKSKL KSRDLEWYFF SALDRKYGSS LRTNRATERG  600
YWKTTGKDRP VHQNSRTVGM KKTLVYHNGR APHGARSNWV MHEYRLVDEE LEKAGIAIDT  660
FVLCRVFQKS GTGPKNGEQY GAPFIEEEWD DDVATFMPDE DAAVDKVDLE ISIPSEKTPC  720
PLNFYYGETS NYDDHCGDFI EVDQKPIIVR SETFEPRHDQ QVADMPEQYE MDIKPINDDY  780
FVELNNSMNP LEVNYSLNKP YLDDTDNPLL GDGLFLESND LLDPAESDPA GFDMLDEYLT  840
FLNSDDDVVF DPSEIVGSEK LVSDQAPLTQ KHENGGTDLV YPESIHLSES QGSNDASSST  900
QKPEATIYES DIKNPLIKRA TDTMDSITAP PAFASEFPAK DAALHFHSAA QSSSSVHVTA  960
GMIRIRNMTS TGNGTDWLLG KNVDINLIMP YSLLQGDINS ASLVAMTDLL AGKTSSVVLR  1020
SWFFLMLFWV LILSVSFKIA SCIYIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-466367519174NAC domain-containing protein 19
3swm_B3e-466367519174NAC domain-containing protein 19
3swm_C3e-466367519174NAC domain-containing protein 19
3swm_D3e-466367519174NAC domain-containing protein 19
3swp_A3e-466367519174NAC domain-containing protein 19
3swp_B3e-466367519174NAC domain-containing protein 19
3swp_C3e-466367519174NAC domain-containing protein 19
3swp_D3e-466367519174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810145.10.0PREDICTED: NAC domain-containing protein 53-like
SwissprotQ84K001e-128NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2I4DSM20.0A0A2I4DSM2_JUGRE; NAC domain-containing protein 53-like
STRINGEMJ200710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-119NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]