PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024912-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 388aa    MW: 43026.2 Da    PI: 4.6694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024912-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-103093491055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  WALNUT_00024912-RA 309 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 349
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.339299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14299360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12304357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-12308353No hitNo description
PfamPF000101.4E-7309349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEPIGAFPDG ESWDYFSKMF STDQELDFTP QFLGQYCSFL LEHDEDLNAR APSSFCPTSD  60
SNTSMTGSVS DSLHYTLESD LNPNLHFFSQ ESSTNGKSCS SSNFFIATDS SHENYFSTDA  120
NHFPVANDMF FNICMMDEKN IGSFVPVFPG AGMGETVGIN DYEDISLTGT DKLDDGSPAE  180
VAVSGKELPP KRKFDTQESH RKAEEKTNSQ SSYQNARKKP RVSRDVQKSK KNEQSKKKQK  240
LSNSSHEEES NAGRDGQSST SYNSEDDASQ ETNAGATSDS KASAPLNMSG GKTRASRGSA  300
TDPQSLYARK RRERINERLR VLQNLVPNGT KVDISTMLEE AVNYVKFLQL QIKLLSSDDL  360
WMFAPIAYNG MDIGLNYQKI SPPDDLCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216239RKKPRVSRDVQKSKKNEQSKKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018859013.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A2I4HS810.0A0A2I4HS81_JUGRE; transcription factor bHLH85-like
STRINGEMJ252311e-120(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-43ROOT HAIR DEFECTIVE 6-LIKE 2