PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00024779-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 442aa MW: 50851.6 Da PI: 6.7259

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00024779-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.5	6.7e-27	120	217	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li+a+++++e+ + ++ +kk++W+++sk+m+erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ WALNUT_00024779-RA 120 KWTDKMVKLLITAVSYIGEDASPDCsgggrrkfvalQKKGKWKSISKVMAERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCKVVENP 210 7*******************99888899999999********************************************569999998 PP trihelix 80 pyfdqle 86 +++d +e WALNUT_00024779-RA 211 SLLDMIE 217 8887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.9E-24	118	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDGNLSQGDL IPGGASYGGF DLQGSMRVHH QAQHPHPGHQ HQSRARQGSS VHPSIHVGFP 60 LTMVTVQNSD QTIPVADFNK GERSKNSMSD EDEPSFAEEG VDGHNEGNRG KKGSPWQRVK 120 WTDKMVKLLI TAVSYIGEDA SPDCSGGGRR KFVALQKKGK WKSISKVMAE RGYHVSPQQC 180 EDKFNDLNKR YKRLNDMLGR GTSCKVVENP SLLDMIEYLT EKEKDDVRKI LSSKQLFYEE 240 MCSYHNGNRL HLPHDPELQR SLHLALRTRD DHDNDDARRH QHDDLDEDDQ DLDTDDRDDF 300 EENHTSHGMY GVLGSAKKMK QGHSHEDVSF GNSLNSQDYN KSPYSHSQIA QADMNQALPE 360 TMRPAWLQKQ WIESRSLQLE EQKLHIQVEM LELEKQRLKW KRFSGKRDHE LEKMRLENER 420 MKLENERMAL ELKRKEMSAG FN

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDGNLSQGDL IPGGASYGGF DLQGSMRVHH QAQHPHPGHQ HQSRARQGSS VHPSIHVGFP  60
LTMVTVQNSD QTIPVADFNK GERSKNSMSD EDEPSFAEEG VDGHNEGNRG KKGSPWQRVK  120
WTDKMVKLLI TAVSYIGEDA SPDCSGGGRR KFVALQKKGK WKSISKVMAE RGYHVSPQQC  180
EDKFNDLNKR YKRLNDMLGR GTSCKVVENP SLLDMIEYLT EKEKDDVRKI LSSKQLFYEE  240
MCSYHNGNRL HLPHDPELQR SLHLALRTRD DHDNDDARRH QHDDLDEDDQ DLDTDDRDDF  300
EENHTSHGMY GVLGSAKKMK QGHSHEDVSF GNSLNSQDYN KSPYSHSQIA QADMNQALPE  360
TMRPAWLQKQ WIESRSLQLE EQKLHIQVEM LELEKQRLKW KRFSGKRDHE LEKMRLENER  420
MKLENERMAL ELKRKEMSAG FN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018839087.1	0.0	PREDICTED: uncharacterized protein LOC109004836
TrEMBL	A0A2I4G5B1	0.0	A0A2I4G5B1_JUGRE; uncharacterized protein LOC109004836
STRING	XP_006473052.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-171	sequence-specific DNA binding transcription factors