PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024663-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 505aa    MW: 57761.4 Da    PI: 9.6882
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024663-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.22.2e-1312603686
            trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                        +k++e g++rs+k+Ckek+en+ k++k++keg++++++++  t+++fdql+
  WALNUT_00024663-RA 12 RKLAELGYNRSAKKCKEKFENVYKYHKRTKEGRIEKSEGK--TYRFFDQLQ 60
                        6789******************************975554..6******98 PP
2trihelix94.97.8e-30320405187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k e++aLi++r+ ++ ++ ++  k+p W ++s+ mr+ g++rs+k+Ckekwen+nk++kk+k+++ kr  e+s+tcpyf++l+a
  WALNUT_00024663-RA 320 RWPKTEIQALIRLRTGLDLKYHESGPKAPMWGDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKDSSVKR-REDSKTCPYFHELDA 405
                         8*********************************************************************8.78999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-81161No hitNo description
Gene3DG3DSA:1.10.10.605.8E-4310376IPR009057Homeodomain-like
PROSITE profilePS500907.689313377IPR017877Myb-like domain
PfamPF138371.5E-20319406No hitNo description
CDDcd122036.35E-26319384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDVFFLANVV FRKLAELGYN RSAKKCKEKF ENVYKYHKRT KEGRIEKSEG KTYRFFDQLQ  60
AFESTHVRQP KPQAISIAVS TPAGLPAWTS TMISSTPNVS HISTVPLTAN PIFISQNAVT  120
PISNSPISPI PAKVPVISSA QTDNPRHVLQ GTNMQSGNLF SSTSTSSSTA SDQELMKGRY  180
KRKRKWKYFF QRLAKEVIKK QEKLQQEFLE TIEKHENERM VREEAWRMQE MARINREHEI  240
LVQERSTAAE KDAAVIAFLQ KISGQHHPTQ AHDKNITTGL LSLPMSRQPL QPPLSVNSSD  300
IHKTNSIENN SLTPDKSSSR WPKTEIQALI RLRTGLDLKY HESGPKAPMW GDISAGMRRL  360
GYNRSAKRCK EKWENINKYF KKVKDSSVKR REDSKTCPYF HELDALYKEK KNKIHSSSSP  420
VNDVKPNSLM EPLMVEPVRQ CRPLQEDNYH PQTAAIMGVI DRTENGEKNY DEEDNKVADS  480
DQEEDDHGDG YEMVINKPSL IENVE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851635.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-118TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I4H6610.0A0A2I4H661_JUGRE; trihelix transcription factor GT-2-like
STRINGXP_002532428.11e-134(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-114Trihelix family protein