PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024530-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 350aa    MW: 38607.5 Da    PI: 6.6054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024530-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12177223455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  WALNUT_00024530-RA 177 DHVMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 223
                         599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.377173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-17178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-12178227No hitNo description
SMARTSM003538.9E-15179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEISSANWIS EVGVEDPIFM HQYDMNSFDY SILDELNFES LSAESYSSYP DLNPKSAHSF  60
NGSAIENPHT GLESPAKQLK TSSWNSCTTD RMTSMAASSS SSKLISFENS NSAPATSQKF  120
LDCTVKPKNE AGSDLRNMNF PTMISESSLE IQNGSSKHEQ DPKRVGTVTR TPLHARDHVM  180
AERKRREKLS QRFIALSAIV PGLKKMDKAS VLGDAIKYLK QLQERVKILE EQAAMKTTKS  240
VVSVKKARLS ADDDISSSDD NSDSHSEHPL PEIEARVSGK NVLIRIHCDK SKGCAAKILS  300
ETEKLDLTII SSNVLPFGNS TLNVTVVAQM DDDFCITAKD LVRNLRRALA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13177232863Transcription factor MYC2
5gnj_B5e-13177232863Transcription factor MYC2
5gnj_E5e-13177232863Transcription factor MYC2
5gnj_F5e-13177232863Transcription factor MYC2
5gnj_G5e-13177232863Transcription factor MYC2
5gnj_I5e-13177232863Transcription factor MYC2
5gnj_M5e-13177232863Transcription factor MYC2
5gnj_N5e-13177232863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813765.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2I4E2Z00.0A0A2I4E2Z0_JUGRE; transcription factor bHLH18-like
STRINGcassava4.1_010938m1e-139(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-50bHLH family protein