PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024210-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 292aa    MW: 32535.3 Da    PI: 7.2494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024210-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-055577123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  WALNUT_00024210-RA 55 YSCSFCNREFRSAQALGGHMNVH 77
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-65282No hitNo description
SMARTSM003550.00285577IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-65578IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5525582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQEAPYWMWM KRKQILESDS QRSVICLNNR TWEEKAFAED AAGPLGGCIW PPRSYSCSFC  60
NREFRSAQAL GGHMNVHRRD RARMKESLSS SNDVAPHHQN HHDQNRSKSL GAQFPTDVCK  120
LFHSRDPKSS PNIVASGALS PSWVSTFYTP ENFSEQRTSA PAHSSSIAQS LSDPVGVRLL  180
MSISESKHGL ANNPREEDST CLRNDDYVET EFSVGMNSFV CQNRPTGSPG DEAISCKRPK  240
TAVSSLSLFL KACSDARYHL QSEVTEVVKP ISMEDLDLEL RLGDPGSPKV KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125077229superman protein
2l1o_A2e-125077229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4445462e-38AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810489.10.0PREDICTED: uncharacterized protein LOC108983348
TrEMBLA0A2I4DTL90.0A0A2I4DTL9_JUGRE; uncharacterized protein LOC108983348
STRINGXP_002524213.13e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-25zinc-finger protein 10