PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023778-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 250aa    MW: 28540.3 Da    PI: 7.4619
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023778-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34221132102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed++++e+isw+e+g++fvv+++ ef++++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF ++ F+kg+ke
  WALNUT_00023778-RA  22 FLLKTYMLVEDPATDEMISWNEEGTAFVVWQPAEFSRDLLPTLFKHSNFSSFVRQLNTYGFRKIVTNR---------WEFCNDMFRKGEKE 103
                         9****************************************************************998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  WALNUT_00023778-RA 104 LLCEIRRRKA 113
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-3317111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3618111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-5318111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEGGCEKGL LEYGRKSSPP PFLLKTYMLV EDPATDEMIS WNEEGTAFVV WQPAEFSRDL  60
LPTLFKHSNF SSFVRQLNTY GFRKIVTNRW EFCNDMFRKG EKELLCEIRR RKAWANKQQA  120
AAPVLTAAPN QSSAATGQDH RFDEDQRSSS TSSSSGFGTL VDENKRLKKA NVDLNSELIS  180
MKKKCKELLD LVAKYTHSEK EDDHDQLEAD ERPKLFGVRL EVHGEREIIM KRKRAEISES  240
ASILLSQPCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211711124129Heat shock factor protein 1
5d5v_B2e-211711124129Heat shock factor protein 1
5d5v_D2e-211711124129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818420.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222308e-72HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2I4EGA20.0A0A2I4EGA2_JUGRE; heat stress transcription factor B-3-like
STRINGPOPTR_0016s05680.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-69heat shock transcription factor B3