PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023721-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 91aa    MW: 10266.6 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023721-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-0721571854
                        HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +  ++Lr+l+P+ + + +s K+  + +L+++++YI+sL
  WALNUT_00023721-RA 21 ELVSKLRQLVPEiR-NRRSDKVPASKVLQETCNYIRSL 57
                        56689*******77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-8375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.899357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-91777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-42157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSSQSG TSRITDDQII ELVSKLRQLV PEIRNRRSDK VPASKVLQET CNYIRSLHRE  60
VDDLSERLSQ LLATIDADSA EASIIRSLIA Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RQLVPEIRNRR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311289e-56KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813796.13e-57PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX19e-38PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4E3197e-56A0A2I4E319_JUGRE; transcription factor PRE6-like
STRINGGorai.006G021800.18e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-36bHLH family protein