PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023573-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 396aa    MW: 43705.4 Da    PI: 4.9885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023573-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-103193591055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  WALNUT_00023573-RA 319 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 359
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14309374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-12314368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.36E-12318363No hitNo description
PfamPF000106.5E-8319359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEPLGAFPDG EWDSFSKIFF GDDQELDFTP QFLGHECSFL LEHDEAGLKY SRAPSTSCPD  60
SEAANMRMTG SVTDSLLYSL DCLNSNLHFI SQESSSSSTN NSNSSSCIFI ATPSHENYHF  120
SDANHIQISS DISMFTNTCM MDDQKNIASF FPGFPDVLMG ETVYNNELDT SLEGSDALED  180
GKPAAVSIPG KELIPKRKFD MPESQTKAEG RNNNQSSEQN SKKKPRVSSR SDVRKSKKNV  240
ESKKNRKLPN GTSQEEKSNI AGPDGQSSTS YCSEDDNASQ EINGGATSES KAVHASIRLS  300
GKSRASRGSA TDPQSLYARK RRERINERLK ILQNLVPNGT KVDISTMLEE AVHYVKFLQL  360
QIKLLSSDDL WMYAPIAYNG MDIGLINQKI SPVPDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810275.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A2I4DSZ70.0A0A2I4DSZ7_JUGRE; transcription factor bHLH85-like
STRINGXP_008220363.11e-120(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-58ROOT HAIR DEFECTIVE 6-LIKE 2