PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022694-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 226aa MW: 25156.8 Da PI: 4.5314

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022694-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	34.7	3.5e-11	77	111	25	59
EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 25 YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +r +s+gCp++k+vers+ dp+++++tY+ eHnh+ WALNUT_00022694-RA 77 WRNSSKGCPARKQVERSRLDPTMLVVTYSCEHNHP 111 577999****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	3.66E-9	69	113	IPR003657	WRKY domain
SMART	SM00774	2.0E-7	71	112	IPR003657	WRKY domain
PROSITE profile	PS50811	15.778	71	113	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.6E-10	77	113	IPR003657	WRKY domain
Pfam	PF03106	4.2E-8	78	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MISTSTEELE ENTDTIPENG DASPPSTIFN DMKNTSASSP RKRRDIHKRV VSVPIKEVEG 60 SRLKGESSTP PYDSWAWRNS SKGCPARKQV ERSRLDPTML VVTYSCEHNH PWPASRNHHS 120 ASSKPEKPET VKLKPEQEAA PEEKFADLGD ESLMASDEFR WFGDMETTTS TVLESPIFAE 180 RSSGGDSDVA MLFTMREEDE SLYADLGELP ECSVVFRGVG PGVEIF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850735.1	1e-160	PREDICTED: probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	3e-61	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2I4H3K1	1e-159	A0A2I4H3K1_JUGRE; probable WRKY transcription factor 65 isoform X2
STRING	evm.model.supercontig_7.92	4e-87	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-63	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]