PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022003-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 580aa    MW: 66365.4 Da    PI: 6.1492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022003-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.91.5e-852135782374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 
                          + Ll++Ae v  ++  +a++lL r   ++sp+g+p+qR++++f+eAL++r+++++ ++    +++  +++n +  + +al  f++  P++
  WALNUT_00022003-RA 213 AHYLLSVAEKVGYQQYDRASRLLLRCDWISSPRGSPVQRVVFHFAEALRERIQNESGRV----RVTGFEQNNaHLGSNSALLKFYQQLPFP 299
                         689**************************************************933333....23333322324445556666******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         +++ +t  qaI+e ve +++vH iD++i  G++W  L+qaLa+R+  +   l+iT++g   s  +e++e+tg+rLa +Ae+l++pf f+ +
  WALNUT_00022003-RA 300 QIALFTGIQAIVENVELKRKVHLIDIEIRSGVHWSLLMQALAERRdFPIELLKITAIGL-GSICNESIEKTGKRLAIVAESLNLPFTFKSV 389
                         ******************************************999345569********.557**************************** PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         + ++++d++ e ++++ +E +++   l l ++ +++ ++e+    +++++++lsP ++vv e ea+hns+sF++rf+eal +y a fdsle
  WALNUT_00022003-RA 390 LLSDMKDIKEELFEIEDEEEVIIFAPLVLRTMISRPNCIEN----FMSVIRNLSPSIMVVFEVEANHNSPSFVNRFIEALFFYCAYFDSLE 476
                         *********************************88888888....********************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                         + + + +eer+  E++ lg++i+n+va eg+ +++r+ t+  Wr+ + ++ + ++ lse+   qa+l++++++  +  +++++ +sl+ gW
  WALNUT_00022003-RA 477 TCMKQYDEERMRTEAF-LGEHIRNLVAEEGRGSTNRNVTMDVWRAFFLRFKMVEIGLSESSLRQASLVVERFScTNYCTLDKNGKSLLVGW 566
                         **************99.********************************************************888789999999****** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+ pL s+S+W+
  WALNUT_00022003-RA 567 KGTPLHSLSVWK 578
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.688186557IPR005202Transcription factor GRAS
PfamPF035145.4E-83213578IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDNTFFFSST PFDFDGIQGS FGSLEGFEKA KQDHLFNFES GEGSPISTRY GFHHGDRGNR  60
GTHFLKDQLQ HQQPKSGYQT FDEFHFNPVF PPTKTIREST GLVHLPTRVS EILENDNQFP  120
HPSSLAFLEL LQDDGSGFQR LQGENSEKLS EISAETRALS RKLSTEEIIR VAGARYVQLS  180
TQMYNYNYHM PMHPFGFALS GLSDDEKKDV ELAHYLLSVA EKVGYQQYDR ASRLLLRCDW  240
ISSPRGSPVQ RVVFHFAEAL RERIQNESGR VRVTGFEQNN AHLGSNSALL KFYQQLPFPQ  300
IALFTGIQAI VENVELKRKV HLIDIEIRSG VHWSLLMQAL AERRDFPIEL LKITAIGLGS  360
ICNESIEKTG KRLAIVAESL NLPFTFKSVL LSDMKDIKEE LFEIEDEEEV IIFAPLVLRT  420
MISRPNCIEN FMSVIRNLSP SIMVVFEVEA NHNSPSFVNR FIEALFFYCA YFDSLETCMK  480
QYDEERMRTE AFLGEHIRNL VAEEGRGSTN RNVTMDVWRA FFLRFKMVEI GLSESSLRQA  540
SLVVERFSCT NYCTLDKNGK SLLVGWKGTP LHSLSVWKFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3721957726378Protein SCARECROW
5b3h_A1e-3721957725377Protein SCARECROW
5b3h_D1e-3721957725377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842487.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4GF150.0A0A2I4GF15_JUGRE; DELLA protein RGL1-like
STRINGXP_008235214.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-53RGA-like 1