PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021623-RA
Common NameGAI
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 613aa    MW: 66789.3 Da    PI: 4.9635
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021623-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.72.9e-1392456041374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l la+al++++  la +++ +m+++a+yf+eALa+r+++        l p++  +++ s+ l++   f+e++P+l
  WALNUT_00021623-RA 245 LVHALMACAEAVQQNSLGLAEALVKQIGYLAVSQAGAMRKVATYFAEALARRIYK--------LYPKNPLDHSLSDILQM--HFYETCPYL 325
                         689****************************************************........44555544456666555..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +v
  WALNUT_00021623-RA 326 KFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEYRGFV 416
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         a++l+dl+ ++L+++p   E++aVn+v++lh+ll++s+++e+    v ++vk+++P++v+vveqea+hn++ Fl+rf+e+l+yys++fdsl
  WALNUT_00021623-RA 417 ANSLADLNASMLDLRPreVESVAVNSVFELHKLLARSGAIEK----VFSVVKQMKPDIVTVVEQEANHNGPVFLDRFTESLHYYSTMFDSL 503
                         ***************988899*********************....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e ++   s++++++++++lg++i+nvv+ceg +r+erhet  +Wr+rl++aGF+pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lg
  WALNUT_00021623-RA 504 EGSV---SNQDKVMSEVYLGKQICNVVSCEGVDRVERHETSVQWRARLGSAGFEPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLG 591
                         ***7...999********************************************************************************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaW+
  WALNUT_00021623-RA 592 WHTRPLIATSAWQ 604
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120417.5E-3545111IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.1E-3545118No hitNo description
PROSITE profilePS5098567.169219583IPR005202Transcription factor GRAS
PfamPF035149.9E-137245604IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MKRELDPNLH SLADSSITAS ASSGSSTGKA KMCWEDEVQP DGGMDELLAV LGYQVRSSDM  60
AEVAQKLELL EDLMGNAQGD GLSQLATDTV HYNPSDLSTW LQSMLSELNP PCNDFDPIVP  120
PAAGAPPAPL DDSLLALAES STITSIDFDK QNNNSHNRVF EESSSSDYDL KAIPGKAMYS  180
QPQSQIEYSP SSRDSKRLKS SSASGSNPDI SFSGSSTTVG GGFTVSTEST RPVVLMDSQE  240
NGIRLVHALM ACAEAVQQNS LGLAEALVKQ IGYLAVSQAG AMRKVATYFA EALARRIYKL  300
YPKNPLDHSL SDILQMHFYE TCPYLKFAHF TANQAILEAF EGKKRVHVID FSMNQGMQWP  360
ALMQALALRP GGPPAFRLTG IGPPAPDNSD HLQEVGWKLA QLAETIHVEF EYRGFVANSL  420
ADLNASMLDL RPREVESVAV NSVFELHKLL ARSGAIEKVF SVVKQMKPDI VTVVEQEANH  480
NGPVFLDRFT ESLHYYSTMF DSLEGSVSNQ DKVMSEVYLG KQICNVVSCE GVDRVERHET  540
SVQWRARLGS AGFEPVHLGS NAFKQASMLL ALFAGGEGYR VEENNGCLML GWHTRPLIAT  600
SAWQLAGKAT LAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6624060314378Protein SCARECROW
5b3h_A5e-6624060313377Protein SCARECROW
5b3h_D5e-6624060313377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7666060.0JF766606.2 Juglans regia cultivar Liaoning 2 GAI-like protein (GAI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814727.10.0PREDICTED: DELLA protein GAIP-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2I4E5Q30.0A0A2I4E5Q3_JUGRE; DELLA protein GAIP-like
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein