PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021384-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 177aa MW: 20477.8 Da PI: 4.3758 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.1 | 8e-11 | 9 | 58 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk 49 lppGfrF Ptdeelv ++L +k++ ++i+++d++ +++Pwd++ WALNUT_00021384-RA 9 LPPGFRFCPTDEELVLHFLFHKASLLLPCHPSIIPDLDLClQYDPWDFNG 58 79********************99887555589****987478****973 PP | |||||||
2 | NAM | 48.9 | 2.1e-15 | 61 | 117 | 73 | 128 |
NAM 73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr+tk+gyWk +d++vl++ ++++vg+k+ +vf g+ap g +t+W+m+ey+l WALNUT_00021384-RA 61 TENRVTKNGYWKDLDTDETVLTSgEKKVVGIKRYFVFCIGQAPAGFETSWIMQEYHL 117 579******************9967778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-35 | 7 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.52 | 9 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-17 | 10 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGDNMSGNLP PGFRFCPTDE ELVLHFLFHK ASLLLPCHPS IIPDLDLCLQ YDPWDFNGMV 60 TENRVTKNGY WKDLDTDETV LTSGEKKVVG IKRYFVFCIG QAPAGFETSW IMQEYHLYNH 120 RDSGKWVLCR VHEREQGNFG DHHYYSDNED NRTELSSPDE VCLSIMDDDL DDQMSFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-24 | 8 | 135 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-24 | 8 | 135 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-24 | 8 | 135 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-24 | 8 | 135 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-24 | 8 | 135 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-24 | 8 | 135 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-24 | 8 | 135 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018839040.1 | 1e-128 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 4e-41 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A2I4G587 | 1e-126 | A0A2I4G587_JUGRE; NAC domain-containing protein 104-like | ||||
STRING | XP_010090830.1 | 6e-50 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-43 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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