PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021043-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 349aa    MW: 38846.9 Da    PI: 10.3947
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021043-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.2e-18206240135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  WALNUT_00021043-RA 206 CQHCGSEKTPQWRAGPFGPKTLCNACGVRYKSGRL 240
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-16200250IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.136200236IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-14202263No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14204238IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.61E-13205253No hitNo description
PfamPF003201.0E-16206240IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDPTSQSSHG YRYLPGWNLS TLLSVHDGGP WQNRWGHRRK VFSLVYVTGE EDDDEDKPRK  60
ALPPLNRRGH GPLSFDLLHS DDPGLPSSEE LAEEDLEWIS NKDAFPAVET FAGILSEHPG  120
SISKHHSPVS LLESSTTSSL TNSTTNSSTL VRCCGSLKFP VRARSKCRQK RRRYMPCQLQ  180
LWWSRQQATT KNVKPVASTA TIGRKCQHCG SEKTPQWRAG PFGPKTLCNA CGVRYKSGRL  240
VPEYRPASSP SFSAELHSNS HRKILEMRRQ KHTGMGMGMG MGMVVTSVDK GILSINGTSV  300
PNDGQIASEF RWVIRGGGGN FSPDPRKNKR QRNGKSSKCW RWSNGRAVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331KNKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845952.11e-142PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 1
SwissprotQ8LAU91e-57GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2I4GPX91e-141A0A2I4GPX9_JUGRE; LOW QUALITY PROTEIN: GATA transcription factor 1
STRINGcassava4.1_014204m4e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-52GATA transcription factor 1