PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00020406-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C3H

Protein Properties

Length: 932aa MW: 102527 Da PI: 8.778

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00020406-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.4e-06	189	210	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lCr+f + G C++G+ C+F H WALNUT_00020406-RA 189 TQLCRDFTA-GRCRRGNHCHFLH 210 78*****.*********** PP
2	zf-CCCH	21.5	4.2e-07	249	271	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t+ C +f r G C++G++C++aH+ WALNUT_00020406-RA 249 TPYCTDFVR-GKCRRGASCRYAHD 271 899****.***********5 PP
3	zf-CCCH	18.6	3.2e-06	313	334	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ffa+ G C+ G C+F+H WALNUT_00020406-RA 313 VPCKFFAA-GNCRNGKYCRFSHH 334 699999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.023	186	213	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-5	188	211	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.002	188	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-7	189	211	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.319	246	273	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	246	272	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-5	249	271	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	251	271	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.742	309	336	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.005	309	335	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.63E-5	313	334	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MSGSSRRRSS KWDLREEERH FESENVQDDS WPGKAGTYHD KELETGWLSP GVAGNNNSKW 60 SDVEANDLLK SKRDAGLASG EPLPRSRGSI KDHSYNRGRN RNLESNVAWD GDGSYSTRMS 120 PGLDEWRGPS HSPSPKNVWS RSLRGRSRSR SRSRSRSRSR SLSRSRSPVR GIRRESGFHD 180 RSRSRGASTQ LCRDFTAGRC RRGNHCHFLH QGNQHHEDNW ESRHRKDGDS KYSTTHDTRD 240 YTSRIGRSTP YCTDFVRGKC RRGASCRYAH DGASDSFDKV SGNDAIRERE NRRNRDASFE 300 RGGEPEHRRG GDVPCKFFAA GNCRNGKYCR FSHHSQADLS PDGRSRGDRW GLGRNSDDVD 360 RLWDGPKLSE WSNTVTVSDT TKSEDKSGKL GAPVARLPRW SIDDTRWGHG MDKEKKSCGD 420 PAVDKAVENN EKAGHLWMEE NAGASIGISE SRGAEKWLGD MDMSPDWNYG VQSANHAVKE 480 EHGQITQAPQ SLGSYDPSLM ARGQDITKEA SVQFHGAAAT VQPIINEKSY FKQNHNLMGD 540 GANVVSCDDK IAVEKTVSSS ADLNVSANIM PGQCFNQNGR SLSSLPLSNM IVVGQNQVVT 600 PNAPLRGGSG TIKYQQNLAF SSEGKPLIQP DIGDDSALQV NPGIPPSQNV VSGEQLTKLT 660 NLSASLAQFF GDRKQLPQLY AALNSHNSSD ISSFTNPEVP LQPVLAAHVQ TDQAIRSQQY 720 DPICDGVESK KPGSSNNPPG LKSNSLGPKS AVDGKPELPL KNLSPSSFPV GPNDTDLPRT 780 GSSEEPNQKS QQSNKLDTGA HGEAMENNGG GTEERKQAQE ENQKEQEDCP SGNADGDAGE 840 DEGKKSKDAK GIRAFKFALV EFVKELLKPT WKEGQISKDA YKTIVKKVVD KVTGGQGANI 900 PQTQERIDHY LSSSKPKLTK LVQAYVEKTQ KG

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MSGSSRRRSS KWDLREEERH FESENVQDDS WPGKAGTYHD KELETGWLSP GVAGNNNSKW  60
SDVEANDLLK SKRDAGLASG EPLPRSRGSI KDHSYNRGRN RNLESNVAWD GDGSYSTRMS  120
PGLDEWRGPS HSPSPKNVWS RSLRGRSRSR SRSRSRSRSR SLSRSRSPVR GIRRESGFHD  180
RSRSRGASTQ LCRDFTAGRC RRGNHCHFLH QGNQHHEDNW ESRHRKDGDS KYSTTHDTRD  240
YTSRIGRSTP YCTDFVRGKC RRGASCRYAH DGASDSFDKV SGNDAIRERE NRRNRDASFE  300
RGGEPEHRRG GDVPCKFFAA GNCRNGKYCR FSHHSQADLS PDGRSRGDRW GLGRNSDDVD  360
RLWDGPKLSE WSNTVTVSDT TKSEDKSGKL GAPVARLPRW SIDDTRWGHG MDKEKKSCGD  420
PAVDKAVENN EKAGHLWMEE NAGASIGISE SRGAEKWLGD MDMSPDWNYG VQSANHAVKE  480
EHGQITQAPQ SLGSYDPSLM ARGQDITKEA SVQFHGAAAT VQPIINEKSY FKQNHNLMGD  540
GANVVSCDDK IAVEKTVSSS ADLNVSANIM PGQCFNQNGR SLSSLPLSNM IVVGQNQVVT  600
PNAPLRGGSG TIKYQQNLAF SSEGKPLIQP DIGDDSALQV NPGIPPSQNV VSGEQLTKLT  660
NLSASLAQFF GDRKQLPQLY AALNSHNSSD ISSFTNPEVP LQPVLAAHVQ TDQAIRSQQY  720
DPICDGVESK KPGSSNNPPG LKSNSLGPKS AVDGKPELPL KNLSPSSFPV GPNDTDLPRT  780
GSSEEPNQKS QQSNKLDTGA HGEAMENNGG GTEERKQAQE ENQKEQEDCP SGNADGDAGE  840
DEGKKSKDAK GIRAFKFALV EFVKELLKPT WKEGQISKDA YKTIVKKVVD KVTGGQGANI  900
PQTQERIDHY LSSSKPKLTK LVQAYVEKTQ KG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	159	RSRSRSRSRSR
2	151	159	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018859088.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_018859089.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_018859090.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_018859091.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBL	A0A2I4HSG4	0.0	A0A2I4HSG4_JUGRE; zinc finger CCCH domain-containing protein 38 isoform X1
STRING	EMJ09602	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4099	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-12	C3H family protein