PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020263-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 336aa    MW: 37251.2 Da    PI: 6.1851
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020263-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.9e-18231265135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  WALNUT_00020263-RA 231 CVHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 265
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-8114313IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.585225261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14225262IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.4E-17225275IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14228289No hitNo description
CDDcd002022.14E-14230281No hitNo description
PfamPF003201.3E-15231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEVPELFMGG CFSAGASPFS PEKQKPGDHF TVDDLLDFSN EDAVMTDGLF DNVAGNSNDS  60
SIVTAVDSCN SANEPQLIYS NISSRSFSDS QFSNELCVPH DELAELEWLS NFVEDSFSAQ  120
QDLEAFHFLS GLTTIATKPQ TPEASSSSET LPPRTAPFFQ PETPLPGKAR SKRSRAPPCD  180
WSTRLLHLTN PSELDTPNQK PPSPDSPHPT PSNEKERNKQ NESDFSSGRK CVHCASEKTP  240
QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFISA KHSNSHRKVL ELRRQKELQR  300
AQHQQFFSRS SIFGVPNGGD DYFIHHHSGP DFRHLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847855.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A2I4GVD00.0A0A2I4GVD0_JUGRE; GATA transcription factor
STRINGXP_007135644.11e-146(Phaseolus vulgaris)
STRINGXP_010098128.11e-147(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-80GATA transcription factor 9