PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020090-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 1573aa    MW: 178817 Da    PI: 5.6799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020090-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.53.3e-772115473342
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsP 89 
                         e L++ Ae v  +++ +a+++L++  + +s++g+p+qR+++yf +AL++++ r++ +++ +   ++ +  ++++++++ +      +e  P
  WALNUT_00020090-RA 211 EFLFASAEKVGFQQFCRANKFLNQCDHWSSKTGSPVQRVVFYFSKALREKIDRETGRIAPKGLGKS-HCIDVDQVIMSSSPpmlaSHEEIP 300
                         679999***********************************************6666654332222.22346666666543555578999* PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         + ++++++  qaI+e ++ ++++H+iD++i +G+QW  L+qaLa+R e p   l+iT+vg    +sk+ l etg+rL++f ++l++pf+f+
  WALNUT_00020090-RA 301 FSQLAQFAGIQAIVEHTADARMIHVIDLGIRNGVQWTILMQALATRYECPLeLLKITAVGT---TSKHLLVETGKRLESFSQSLNLPFSFK 388
                         **********************************************96655499*******...6899*********************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         v++ +++ dl+ + ++++ +E +aV +++ l ++  ++ +les    ++k+v+s++P ++vv+e ea+hns+ F+ rf+eal ++ a fd+
  WALNUT_00020090-RA 389 VVMISDMVDLREDLFELDANERVAVYSAYLLRTMIPRPNQLES----IMKVVRSINPCIMVVTEIEANHNSPVFVSRFVEALFFFGAYFDC 475
                         *******************************999977777777....******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                         le+ + r++ +r+++E  ++g++i+n+va+eg+er  r+ +   Wr+ + + G+ + +ls +   qa+l  r
  WALNUT_00020090-RA 476 LETFMKRDDPNRMVIESLFFGEAIRNIVAAEGEERSTRNVKIDVWRAFFARYGMLETELSMSSLYQARLCGR 547
                         ******************************************************************998655 PP

2GRAS259.71e-796349964367
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPi 90 
                         lLl+ Ae v ++++ + ++lL+    l+s +g+++qR ++yft+AL++r+ r++ ++  + + s++++k+++e+++++       +   P+
  WALNUT_00020090-RA 634 LLLASAEKVGKQEFDQGSKLLNLCDFLSSRTGSSVQRTVHYFTKALQERIERETRRMTLKGSKSSEEHKSHQETMMYVDPalivCFLHLPF 724
                         899*************************************************7777665544444443444444444432445545567** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         +++ ++   qaI+++v+++++vH iD+ i  G+  + L+qaLa+R e p   l++T+vg    +sk+e+e+tg+rLa+fAe+l++pf f++
  WALNUT_00020090-RA 725 YQIINFSGIQAIVDSVASAKKVHYIDLAIRSGGCCIVLMQALATRFECPIeLLKVTAVGT---TSKQEIEKTGKRLAHFAETLNMPFLFKI 812
                         *********************************************97665499*******...68************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         +++++++dl+ + ++ k gE++aV + ++l ++l ++  les    ++k++++l+P v+vv+e eadhns++Fl rf+eal +ysa+f++l
  WALNUT_00020090-RA 813 VMVRDFKDLNEDIFESKAGEVVAVYSPVMLNKMLMKPSLLES----LIKVLRDLNPCVMVVTEVEADHNSPTFLGRFSEALFFYSAFFECL 899
                         **********************************88888887....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e+ + +++++r+++E+ +++rei+++va+eg+ r+ rh +   Wr+ +e+  +++ +ls      a+ll+++++ +   +++ + ++l+ g
  WALNUT_00020090-RA 900 EVCMDQNDSNRMTLEATYFSREIRDIVATEGEYRTFRHMKIDAWRNYFERYSMEEQELSILSLHHAELLVKNFAcGSSCTLDRNGKCLTVG 990
                         **************************************************************************9999************* PP

                GRAS 362 WkdrpL 367
                         Wk+rp+
  WALNUT_00020090-RA 991 WKGRPM 996
                         ****97 PP

3GRAS295.71.2e-90119415642374
                GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fs 85  
                           e L++ Ae v s+++e+a+++L++  +l+s +g+p+qR++ yf eAL++++ r ++ +++k    +++   n++eel++ +      +
  WALNUT_00020090-RA 1194 AESLFASAEKVGSQQFERARKFLNQCDHLSSTTGNPVQRVVYYFSEALREKIDReTGRNTSKDSGKRPS--INVEEELMSSSPptlaAH 1280
                          5789**************************************************445555554444433..456666666643455688 PP

                GRAS   86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173 
                          e  P+ ++++++  qaI e + +++++HiiD++i +G+QW  L+qaLa+R e p   l+iT+vg    +sk+ l etg+rLa+fA++l+
  WALNUT_00020090-RA 1281 EELPFSQVTQFAGIQAIIENTVEARKIHIIDLGIRNGVQWTILMQALATRCECPLeLLKITAVGT---TSKHLLVETGKRLASFAQSLN 1366
                          999***********************************************96655499*******...6899***************** PP

                GRAS  174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 
                          +pf+fnv++++++ dl+ + ++++ +E++a  +++ l ++   + +les    ++k+v+s++P +++v+e ea+hns+ F+ rf+eal 
  WALNUT_00020090-RA 1367 LPFSFNVVMVSDMLDLREDLFELDADETVAFYSAYILRSIITWPNQLES----IMKVVRSINPCIMIVTEVEASHNSPAFVSRFVEALF 1451
                          ***************************************9966666666....************************************ PP

                GRAS  263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 
                          ++sa+fd+le+ + r++++r+  E +++g+ i+n+va+eg+er+ rh +   Wr+ + + G+ + +ls +   qa  l++k++ ++ ++
  WALNUT_00020090-RA 1452 FFSAFFDCLETFMKRDDQNRMITESKFFGEGIRNIVAAEGEERKIRHVKIDVWRAFFARYGMVETELSRSSLYQATILVKKFHcEKSFT 1540
                          ***********************************************************************************9999** PP

                GRAS  351 veeesgslvlgWkdrpLvsvSaWr 374 
                          ++ + ++l+  Wk+ p+ s+SaW+
  WALNUT_00020090-RA 1541 LDMNGKCLITVWKGTPICSLSAWK 1564
                          ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.311183559IPR005202Transcription factor GRAS
PfamPF035141.1E-74211547IPR005202Transcription factor GRAS
PROSITE profilePS5098539.264605982IPR005202Transcription factor GRAS
PfamPF035143.5E-77634996IPR005202Transcription factor GRAS
PROSITE profilePS5098543.99111671543IPR005202Transcription factor GRAS
PfamPF035144.0E-8811941564IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1573 aa     Download sequence    Send to blast
MFSSEYFGFD GVEDQFSCSE KVWERMDEMN GGKHLHFNAE ADQRASGFGF YQKELSSEEG  60
FLLSKYQQQE MQHVSLSGYG LVDDLQFHIG SPRLQTCLEE ISKLGESSTL IPYNEPKNRN  120
QQPFSLLLNN SENRFKGLNN GDRIVEQSNG MPRTKVEDRK LSTEEILRLA GAKFIQSSSQ  180
TADCLSTLSH PFEFAFNGLS NEENDDSELA EFLFASAEKV GFQQFCRANK FLNQCDHWSS  240
KTGSPVQRVV FYFSKALREK IDRETGRIAP KGLGKSHCID VDQVIMSSSP PMLASHEEIP  300
FSQLAQFAGI QAIVEHTADA RMIHVIDLGI RNGVQWTILM QALATRYECP LELLKITAVG  360
TTSKHLLVET GKRLESFSQS LNLPFSFKVV MISDMVDLRE DLFELDANER VAVYSAYLLR  420
TMIPRPNQLE SIMKVVRSIN PCIMVVTEIE ANHNSPVFVS RFVEALFFFG AYFDCLETFM  480
KRDDPNRMVI ESLFFGEAIR NIVAAEGEER STRNVKIDVW RAFFARYGML ETELSMSSLY  540
QARLCGRVRQ FVLFLLGSSS DKSRKENVEP NKGQLYMAGV RRLSIEEVMK VARERFIQFS  600
SQNCDDHSML GSVFGSAPFG LSCQETKDVE LACLLLASAE KVGKQEFDQG SKLLNLCDFL  660
SSRTGSSVQR TVHYFTKALQ ERIERETRRM TLKGSKSSEE HKSHQETMMY VDPALIVCFL  720
HLPFYQIINF SGIQAIVDSV ASAKKVHYID LAIRSGGCCI VLMQALATRF ECPIELLKVT  780
AVGTTSKQEI EKTGKRLAHF AETLNMPFLF KIVMVRDFKD LNEDIFESKA GEVVAVYSPV  840
MLNKMLMKPS LLESLIKVLR DLNPCVMVVT EVEADHNSPT FLGRFSEALF FYSAFFECLE  900
VCMDQNDSNR MTLEATYFSR EIRDIVATEG EYRTFRHMKI DAWRNYFERY SMEEQELSIL  960
SLHHAELLVK NFACGSSCTL DRNGKCLTVG WKGRPMANKV FSFGEEFGFD AVEDNFNWSE  1020
KVWESMDKVN GGKYFHQEDL SDEDFNFSQH QQQQVSFSEN GFLDDLQFHA ASPPLHTCLE  1080
EIAKLGEFPT LIPEVEPRKR KRQRFSLASL ELLKNYGNRF KQFNGDRVTE PSNDVACTKV  1140
EDPKLSTEEI VRLAGAKFIQ STSQAADGPS GLSHPFHLDF CGLSDEERRD VELAESLFAS  1200
AEKVGSQQFE RARKFLNQCD HLSSTTGNPV QRVVYYFSEA LREKIDRETG RNTSKDSGKR  1260
PSINVEEELM SSSPPTLAAH EELPFSQVTQ FAGIQAIIEN TVEARKIHII DLGIRNGVQW  1320
TILMQALATR CECPLELLKI TAVGTTSKHL LVETGKRLAS FAQSLNLPFS FNVVMVSDML  1380
DLREDLFELD ADETVAFYSA YILRSIITWP NQLESIMKVV RSINPCIMIV TEVEASHNSP  1440
AFVSRFVEAL FFFSAFFDCL ETFMKRDDQN RMITESKFFG EGIRNIVAAE GEERKIRHVK  1500
IDVWRAFFAR YGMVETELSR SSLYQATILV KKFHCEKSFT LDMNGKCLIT VWKGTPICSL  1560
SAWKFLSQQQ KGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-38239156433375GRAS family transcription factor containing protein, expressed
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110981103KRKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811562.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DWN40.0A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
STRINGXP_008223345.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-50RGA-like 2