PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020090-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | GRAS | ||||||||
Protein Properties | Length: 1573aa MW: 178817 Da PI: 5.6799 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 251.5 | 3.3e-77 | 211 | 547 | 3 | 342 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsP 89 e L++ Ae v +++ +a+++L++ + +s++g+p+qR+++yf +AL++++ r++ +++ + ++ + ++++++++ + +e P WALNUT_00020090-RA 211 EFLFASAEKVGFQQFCRANKFLNQCDHWSSKTGSPVQRVVFYFSKALREKIDRETGRIAPKGLGKS-HCIDVDQVIMSSSPpmlaSHEEIP 300 679999***********************************************6666654332222.22346666666543555578999* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 + ++++++ qaI+e ++ ++++H+iD++i +G+QW L+qaLa+R e p l+iT+vg +sk+ l etg+rL++f ++l++pf+f+ WALNUT_00020090-RA 301 FSQLAQFAGIQAIVEHTADARMIHVIDLGIRNGVQWTILMQALATRYECPLeLLKITAVGT---TSKHLLVETGKRLESFSQSLNLPFSFK 388 **********************************************96655499*******...6899*********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 v++ +++ dl+ + ++++ +E +aV +++ l ++ ++ +les ++k+v+s++P ++vv+e ea+hns+ F+ rf+eal ++ a fd+ WALNUT_00020090-RA 389 VVMISDMVDLREDLFELDANERVAVYSAYLLRTMIPRPNQLES----IMKVVRSINPCIMVVTEIEANHNSPVFVSRFVEALFFFGAYFDC 475 *******************************999977777777....******************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 le+ + r++ +r+++E ++g++i+n+va+eg+er r+ + Wr+ + + G+ + +ls + qa+l r WALNUT_00020090-RA 476 LETFMKRDDPNRMVIESLFFGEAIRNIVAAEGEERSTRNVKIDVWRAFFARYGMLETELSMSSLYQARLCGR 547 ******************************************************************998655 PP | |||||||
2 | GRAS | 259.7 | 1e-79 | 634 | 996 | 4 | 367 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPi 90 lLl+ Ae v ++++ + ++lL+ l+s +g+++qR ++yft+AL++r+ r++ ++ + + s++++k+++e+++++ + P+ WALNUT_00020090-RA 634 LLLASAEKVGKQEFDQGSKLLNLCDFLSSRTGSSVQRTVHYFTKALQERIERETRRMTLKGSKSSEEHKSHQETMMYVDPalivCFLHLPF 724 899*************************************************7777665544444443444444444432445545567** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 +++ ++ qaI+++v+++++vH iD+ i G+ + L+qaLa+R e p l++T+vg +sk+e+e+tg+rLa+fAe+l++pf f++ WALNUT_00020090-RA 725 YQIINFSGIQAIVDSVASAKKVHYIDLAIRSGGCCIVLMQALATRFECPIeLLKVTAVGT---TSKQEIEKTGKRLAHFAETLNMPFLFKI 812 *********************************************97665499*******...68************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +++++++dl+ + ++ k gE++aV + ++l ++l ++ les ++k++++l+P v+vv+e eadhns++Fl rf+eal +ysa+f++l WALNUT_00020090-RA 813 VMVRDFKDLNEDIFESKAGEVVAVYSPVMLNKMLMKPSLLES----LIKVLRDLNPCVMVVTEVEADHNSPTFLGRFSEALFFYSAFFECL 899 **********************************88888887....********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 e+ + +++++r+++E+ +++rei+++va+eg+ r+ rh + Wr+ +e+ +++ +ls a+ll+++++ + +++ + ++l+ g WALNUT_00020090-RA 900 EVCMDQNDSNRMTLEATYFSREIRDIVATEGEYRTFRHMKIDAWRNYFERYSMEEQELSILSLHHAELLVKNFAcGSSCTLDRNGKCLTVG 990 **************************************************************************9999************* PP GRAS 362 WkdrpL 367 Wk+rp+ WALNUT_00020090-RA 991 WKGRPM 996 ****97 PP | |||||||
3 | GRAS | 295.7 | 1.2e-90 | 1194 | 1564 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fs 85 e L++ Ae v s+++e+a+++L++ +l+s +g+p+qR++ yf eAL++++ r ++ +++k +++ n++eel++ + + WALNUT_00020090-RA 1194 AESLFASAEKVGSQQFERARKFLNQCDHLSSTTGNPVQRVVYYFSEALREKIDReTGRNTSKDSGKRPS--INVEEELMSSSPptlaAH 1280 5789**************************************************445555554444433..456666666643455688 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173 e P+ ++++++ qaI e + +++++HiiD++i +G+QW L+qaLa+R e p l+iT+vg +sk+ l etg+rLa+fA++l+ WALNUT_00020090-RA 1281 EELPFSQVTQFAGIQAIIENTVEARKIHIIDLGIRNGVQWTILMQALATRCECPLeLLKITAVGT---TSKHLLVETGKRLASFAQSLN 1366 999***********************************************96655499*******...6899***************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +pf+fnv++++++ dl+ + ++++ +E++a +++ l ++ + +les ++k+v+s++P +++v+e ea+hns+ F+ rf+eal WALNUT_00020090-RA 1367 LPFSFNVVMVSDMLDLREDLFELDADETVAFYSAYILRSIITWPNQLES----IMKVVRSINPCIMIVTEVEASHNSPAFVSRFVEALF 1451 ***************************************9966666666....************************************ PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 ++sa+fd+le+ + r++++r+ E +++g+ i+n+va+eg+er+ rh + Wr+ + + G+ + +ls + qa l++k++ ++ ++ WALNUT_00020090-RA 1452 FFSAFFDCLETFMKRDDQNRMITESKFFGEGIRNIVAAEGEERKIRHVKIDVWRAFFARYGMVETELSRSSLYQATILVKKFHcEKSFT 1540 ***********************************************************************************9999** PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 ++ + ++l+ Wk+ p+ s+SaW+ WALNUT_00020090-RA 1541 LDMNGKCLITVWKGTPICSLSAWK 1564 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.311 | 183 | 559 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-74 | 211 | 547 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 39.264 | 605 | 982 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-77 | 634 | 996 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 43.991 | 1167 | 1543 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-88 | 1194 | 1564 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1573 aa Download sequence Send to blast |
MFSSEYFGFD GVEDQFSCSE KVWERMDEMN GGKHLHFNAE ADQRASGFGF YQKELSSEEG 60 FLLSKYQQQE MQHVSLSGYG LVDDLQFHIG SPRLQTCLEE ISKLGESSTL IPYNEPKNRN 120 QQPFSLLLNN SENRFKGLNN GDRIVEQSNG MPRTKVEDRK LSTEEILRLA GAKFIQSSSQ 180 TADCLSTLSH PFEFAFNGLS NEENDDSELA EFLFASAEKV GFQQFCRANK FLNQCDHWSS 240 KTGSPVQRVV FYFSKALREK IDRETGRIAP KGLGKSHCID VDQVIMSSSP PMLASHEEIP 300 FSQLAQFAGI QAIVEHTADA RMIHVIDLGI RNGVQWTILM QALATRYECP LELLKITAVG 360 TTSKHLLVET GKRLESFSQS LNLPFSFKVV MISDMVDLRE DLFELDANER VAVYSAYLLR 420 TMIPRPNQLE SIMKVVRSIN PCIMVVTEIE ANHNSPVFVS RFVEALFFFG AYFDCLETFM 480 KRDDPNRMVI ESLFFGEAIR NIVAAEGEER STRNVKIDVW RAFFARYGML ETELSMSSLY 540 QARLCGRVRQ FVLFLLGSSS DKSRKENVEP NKGQLYMAGV RRLSIEEVMK VARERFIQFS 600 SQNCDDHSML GSVFGSAPFG LSCQETKDVE LACLLLASAE KVGKQEFDQG SKLLNLCDFL 660 SSRTGSSVQR TVHYFTKALQ ERIERETRRM TLKGSKSSEE HKSHQETMMY VDPALIVCFL 720 HLPFYQIINF SGIQAIVDSV ASAKKVHYID LAIRSGGCCI VLMQALATRF ECPIELLKVT 780 AVGTTSKQEI EKTGKRLAHF AETLNMPFLF KIVMVRDFKD LNEDIFESKA GEVVAVYSPV 840 MLNKMLMKPS LLESLIKVLR DLNPCVMVVT EVEADHNSPT FLGRFSEALF FYSAFFECLE 900 VCMDQNDSNR MTLEATYFSR EIRDIVATEG EYRTFRHMKI DAWRNYFERY SMEEQELSIL 960 SLHHAELLVK NFACGSSCTL DRNGKCLTVG WKGRPMANKV FSFGEEFGFD AVEDNFNWSE 1020 KVWESMDKVN GGKYFHQEDL SDEDFNFSQH QQQQVSFSEN GFLDDLQFHA ASPPLHTCLE 1080 EIAKLGEFPT LIPEVEPRKR KRQRFSLASL ELLKNYGNRF KQFNGDRVTE PSNDVACTKV 1140 EDPKLSTEEI VRLAGAKFIQ STSQAADGPS GLSHPFHLDF CGLSDEERRD VELAESLFAS 1200 AEKVGSQQFE RARKFLNQCD HLSSTTGNPV QRVVYYFSEA LREKIDRETG RNTSKDSGKR 1260 PSINVEEELM SSSPPTLAAH EELPFSQVTQ FAGIQAIIEN TVEARKIHII DLGIRNGVQW 1320 TILMQALATR CECPLELLKI TAVGTTSKHL LVETGKRLAS FAQSLNLPFS FNVVMVSDML 1380 DLREDLFELD ADETVAFYSA YILRSIITWP NQLESIMKVV RSINPCIMIV TEVEASHNSP 1440 AFVSRFVEAL FFFSAFFDCL ETFMKRDDQN RMITESKFFG EGIRNIVAAE GEERKIRHVK 1500 IDVWRAFFAR YGMVETELSR SSLYQATILV KKFHCEKSFT LDMNGKCLIT VWKGTPICSL 1560 SAWKFLSQQQ KGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-38 | 239 | 1564 | 33 | 375 | GRAS family transcription factor containing protein, expressed |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1098 | 1103 | KRKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811562.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A2I4DWN4 | 0.0 | A0A2I4DWN4_JUGRE; DELLA protein RGL1-like | ||||
STRING | XP_008223345.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 7e-50 | RGA-like 2 |