PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019996-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 91aa MW: 10392.8 Da PI: 9.3627 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.5e-07 | 18 | 57 | 15 | 54 |
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +i + ++Lr+l+P+ + + +s K+ + +L+++++YI++L WALNUT_00019996-RA 18 QIIDLVSKLRQLVPEiR-NRRSDKVPASKVLQETCNYIRNL 57 5667779********77.89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.448 | 3 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-9 | 17 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-8 | 17 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-4 | 18 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MSSRRSRQSG TSRITDDQII DLVSKLRQLV PEIRNRRSDK VPASKVLQET CNYIRNLHRE 60 VDDLSERLSQ LLATIDAESA EASIIRSLIT Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 36 | RQLVPEIRNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU916951 | 8e-50 | EU916951.1 Corylus avellana clone K88-15-23 microsatellite sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835917.1 | 9e-58 | PREDICTED: transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 1e-38 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A2I4FW89 | 2e-56 | A0A2I4FW89_JUGRE; transcription factor PRE6-like | ||||
STRING | XP_008230751.1 | 3e-48 | (Prunus mume) | ||||
STRING | XP_009347048.1 | 3e-48 | (Pyrus x bretschneideri) | ||||
STRING | XP_008341557.1 | 3e-48 | (Malus domestica) | ||||
STRING | EMJ16398 | 3e-48 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 1e-37 | bHLH family protein |