PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019759-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27713.3 Da PI: 6.9254 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.6 | 2.7e-45 | 5 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +pGfrF Pt+eelv++yL+kk+eg++ +l++vi+ v +y++ePw+Lpk +++++++w+fF++r++++a+g r+ r+t sgyWkatg+ WALNUT_00019759-RA 5 QPGFRFYPTEEELVSFYLHKKLEGTRPDLHRVIPVVPVYDIEPWNLPKlageLCQGDTEQWFFFTPRQEREAKGGRPCRTTVSGYWKATGS 95 69***************************99****************656754455777******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ WALNUT_00019759-RA 96 PGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 135 **************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-46 | 4 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.999 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-23 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEVTQPGFRF YPTEEELVSF YLHKKLEGTR PDLHRVIPVV PVYDIEPWNL PKLAGELCQG 60 DTEQWFFFTP RQEREAKGGR PCRTTVSGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEIET GQSNTVVPKL RHEFSLCRMY VISGSFRAFD RRPEVSTRMT 180 QNVVDGAAST PPQNATVVEK TSSSDTSFSG GDHADLQEVA GSICWDITDT LEPLWEWEPL 240 NWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-33 | 6 | 160 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-33 | 6 | 160 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-33 | 6 | 160 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-33 | 6 | 160 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 6 | 160 | 22 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-33 | 6 | 160 | 19 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-33 | 6 | 160 | 19 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814651.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-92 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2I4E5H2 | 0.0 | A0A2I4E5H2_JUGRE; NAC domain-containing protein 90-like | ||||
STRING | cassava4.1_014914m | 1e-122 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 8e-89 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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