PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019511-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39449.3 Da PI: 7.6273 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182 | 1.5e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtdeel+++yL +kv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke WALNUT_00019511-RA 16 LPAGFRFHPTDEELITHYLSQKVLNANFSA-RAIGEVDLNKCEPWELPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKE 105 799*************************99.89***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkge+tdWvmheyrle WALNUT_00019511-RA 106 IYR-RKALVGMKKTLVFYKGRAPKGERTDWVMHEYRLE 142 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-63 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.099 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MENVSSLGEE DEQIELPAGF RFHPTDEELI THYLSQKVLN ANFSARAIGE VDLNKCEPWE 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRRK ALVGMKKTLV 120 FYKGRAPKGE RTDWVMHEYR LEGKYSVYNL PKTAKNEWVI CRVFKKISAG KKTHISGLVN 180 LGSYAKGPRP SLLPPLMDSS PYNSRTRTDV GETTHVTCLS DPMEEHETKE DLVDGFNSTP 240 GLAAASSSSP NPSYNISYAP NSSYHSNTGN FQFSESILMH DQSILRMLLE NHAPMMKRNT 300 KAEFFSPETG FSTDISSAVT DQEMVMQRSF GDQGNPSSSA GPGLWSYQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813958.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-128 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2I4E3I8 | 0.0 | A0A2I4E3I8_JUGRE; NAC domain-containing protein 100-like | ||||
STRING | EMJ16814 | 1e-165 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-120 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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