PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019442-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 260aa    MW: 29383.1 Da    PI: 9.628
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019442-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-52141431128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp++  +   e+e yfFs+r+ ky++g+r+nrat +gyWkatg d
  WALNUT_00019442-RA  14 LPPGFRFHPTDEELVVQYLKRKVLSCPLPA-SIIPEVDVCKYDPWDLPASWGSgdLEQERYFFSTREAKYPNGNRSNRATGAGYWKATGID 103
                         79****************************.89***************755551144588******************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyr+
  WALNUT_00019442-RA 104 KQIVTSrGNQVVGMKKTLVFYRGKPPRGSRTDWIMHEYRF 143
                         **999857778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6010178IPR003441NAC domain
PROSITE profilePS5100557.96414178IPR003441NAC domain
PfamPF023656.2E-2715142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVLSCP LPASIIPEVD VCKYDPWDLP  60
ASWGSGDLEQ ERYFFSTREA KYPNGNRSNR ATGAGYWKAT GIDKQIVTSR GNQVVGMKKT  120
LVFYRGKPPR GSRTDWIMHE YRFVNAETTA ANAPQKKNST ESLAVPMDNW VLCRIFLKKR  180
SSKNEDENVQ FGNDKAARKL GVTRPVFYDF MTKDKTDLNL APASSSSGSS GVTEVSSNES  240
DHDHEESSSC NSLPFFRRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-541218315170NO APICAL MERISTEM PROTEIN
1ut4_B4e-541218315170NO APICAL MERISTEM PROTEIN
1ut7_A4e-541218315170NO APICAL MERISTEM PROTEIN
1ut7_B4e-541218315170NO APICAL MERISTEM PROTEIN
3swm_A4e-541218318173NAC domain-containing protein 19
3swm_B4e-541218318173NAC domain-containing protein 19
3swm_C4e-541218318173NAC domain-containing protein 19
3swm_D4e-541218318173NAC domain-containing protein 19
3swp_A4e-541218318173NAC domain-containing protein 19
3swp_B4e-541218318173NAC domain-containing protein 19
3swp_C4e-541218318173NAC domain-containing protein 19
3swp_D4e-541218318173NAC domain-containing protein 19
4dul_A4e-541218315170NAC domain-containing protein 19
4dul_B4e-541218315170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811837.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-100NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2I4DXH00.0A0A2I4DXH0_JUGRE; NAC domain-containing protein 83-like
STRINGcassava4.1_014491m1e-154(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-98NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]