PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019251-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 755aa MW: 83490.9 Da PI: 5.4841 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.1 | 7e-14 | 49 | 84 | 21 | 56 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k WALNUT_00019251-RA 49 ECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 84 689******************************998 PP | |||||||
2 | START | 163.8 | 1.3e-51 | 233 | 460 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 la + ++elvk+ +ep+W + eng evl +e ++ ++ea+r+s+vv+m++ +lv +ld + +W e ++ WALNUT_00019251-RA 233 LAVSSMDELVKMCRGTEPLWIRNN--ENGREVLNLEEHARMfpwplnlrhhsneLRTEASRDSAVVIMNSITLVDAFLDAN-KWMELFPsi 320 78899*****************99..**********99888****************************************.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE...TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq..lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 +a+t++v+ssg g lqlm+aelq+lsplvp R+ f+Ry++q ++ag+w+ivd +ds ++ + +s+ R +++pSg+li+++ WALNUT_00019251-RA 321 vsRAKTVQVLSSGdsghasGSLQLMYAELQVLSPLVPtREGHFLRYCQQnaEEAGTWAIVDFPIDSFHDNLQRPSFPRYKRRPSGCLIQDM 411 *********************************************************************988******************* PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +ng+s+vtw+eh++++++ +h+ + +v sg+a+ga++w+a lqrqce+ WALNUT_00019251-RA 412 PNGYSRVTWIEHAEVEEKPVHQFFSDFVYSGMAFGAQRWLAVLQRQCER 460 ***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.4E-6 | 42 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.36E-12 | 48 | 87 | No hit | No description |
SuperFamily | SSF46689 | 9.19E-12 | 49 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 49 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.1E-11 | 49 | 84 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.07 | 51 | 86 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.407 | 223 | 463 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-31 | 224 | 462 | No hit | No description |
CDD | cd08875 | 3.75E-125 | 227 | 459 | No hit | No description |
SMART | SM00234 | 2.7E-36 | 232 | 460 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-43 | 233 | 460 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-18 | 478 | 657 | No hit | No description |
SuperFamily | SSF55961 | 1.51E-18 | 684 | 721 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 755 aa Download sequence Send to blast |
MYGDCQVMPT MAGNVVSSES LFSSPPIQNP SFNFMPGMPF QTFPPMIAEC PHPDDKQRLK 60 LSQELGLKPR QVKFWFQNRR TQMKAQQDRT DNAILKVENE TLRQENFRLQ RALSNVVCPN 120 CGGPCMIGGE MGLDEQQLRL ENSRLREELE RVSSCLASQY AGRPIEAMQA AATFMPPPSL 180 DLDMNIYSRH FQDPMASCTD MTPVPMLMPP ETAYHFPEAG LLLEEEKPIA LELAVSSMDE 240 LVKMCRGTEP LWIRNNENGR EVLNLEEHAR MFPWPLNLRH HSNELRTEAS RDSAVVIMNS 300 ITLVDAFLDA NKWMELFPSI VSRAKTVQVL SSGDSGHASG SLQLMYAELQ VLSPLVPTRE 360 GHFLRYCQQN AEEAGTWAIV DFPIDSFHDN LQRPSFPRYK RRPSGCLIQD MPNGYSRVTW 420 IEHAEVEEKP VHQFFSDFVY SGMAFGAQRW LAVLQRQCER VASLMARNIS DLGVIPSPEA 480 RKNLMKLAQR MVRTFCVNIS TSSGLIWTAL SDSPDDTVRI ATRKITEPGQ PNGLILCAVS 540 STWLPYPHNH VFGLLRDERR RSQLDVISNG NSLHEVAHIA NGSHPGNCVS LLRINVASNS 600 SQHVELMLQE SCTDDSGSLV VYTTIDVDSI QLAMSGEDPS CIPLLPMGFV IVPVGSTGET 660 TNISGDGNPN IPSSEEGNSP TSSGCLLTVV VQDLVSTIPS AKLNLSSVNS INNHLCNALH 720 QITAALSSTI SKTSCPDNAS ALGSCTEPTS APPKH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427944 | 4e-38 | AM427944.2 Vitis vinifera contig VV78X076481.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840870.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5-like, partial | ||||
Swissprot | Q336P2 | 0.0 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A2I4GAH5 | 0.0 | A0A2I4GAH5_JUGRE; homeobox-leucine zipper protein HDG5-like | ||||
STRING | XP_007158253.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10946 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
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