PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018763-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 209aa    MW: 23407.8 Da    PI: 5.7016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018763-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.8e-124188655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                        + +Er+RR++++  ++eL +l+P++   +s+   s  + L +Av YIk++q
  WALNUT_00018763-RA 41 KTIERNRRNQMKALYSELNSLVPHQ---NSREvTSLPDQLDEAVTYIKKMQ 88
                        689*********************9...88888****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.1223587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1140101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1141102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-84188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-44193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-64392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTNVCGDARL IVSSAVDLVL LLIILLMENN PSSSRSSTDR KTIERNRRNQ MKALYSELNS  60
LVPHQNSREV TSLPDQLDEA VTYIKKMQIN LEKMNEKKDS LMGIDQKPNA GTNGSGMTYS  120
SVQLRSPQIE ISEIGSALQV VLITGLDFQF MFNETIRVLH EEGTEIVNAN FTVVDDIVFH  180
TIHAKVGESA LMGYEAARIS ERLKKICQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852439.11e-135PREDICTED: transcription factor bHLH36
SwissprotF4JIJ72e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A2I4H8G21e-133A0A2I4H8G2_JUGRE; transcription factor bHLH36
STRINGXP_002509465.18e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-49bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]