PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018762-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 367aa    MW: 42382.7 Da    PI: 9.1533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018762-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17156247291
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +k+l++sdv+++gr+vlpk+ aee+   ++ + +++++++d  s+++W+vk++y  ++ks++yvl+ ++ +Fv++n+L  gD+++++  ++
  WALNUT_00018762-RA 156 KKELKNSDVGSLGRIVLPKREAEENlpTLSDKDGIQIVIRDvYSNQEWSVKYKYwsNNKSRMYVLE-NTVDFVRQNELVIGDSITLY--ED 243
                         6899***********************555568899*****8888*******99888888889999.9******************9..44 PP

                         SEE. CS
                  B3  88 sefe 91 
                         ++++
  WALNUT_00018762-RA 244 ECKN 247
                         5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-24152248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-21154244No hitNo description
SuperFamilySSF1019361.7E-19155248IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-17155258IPR003340B3 DNA binding domain
PROSITE profilePS508639.587155258IPR003340B3 DNA binding domain
PfamPF023628.8E-15157248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDNFFTPIPT TKTTTRAPST SSPFETSLVY YFPPHEGHLQ FPHAFPLDQV GQHLAYPAYS  60
FVIGAGPQPH LLSKEQERRL VDAWTTKVAR SKRKMARQRS LSSSKNPASW ATSTQVYTRG  120
LPVYGAVDAE TQNSNIKRDP YTFFTPDKKR LRVLLKKELK NSDVGSLGRI VLPKREAEEN  180
LPTLSDKDGI QIVIRDVYSN QEWSVKYKYW SNNKSRMYVL ENTVDFVRQN ELVIGDSITL  240
YEDECKNLTG RTEHVRNKHS FFGYVTIKRG ERPVVDHQDL EDDDQQQQQR PAYRKDMMMM  300
SNRNHMMMSY NQYYTPFTYG NRDEEEAYLA LLIEQLRHKE ELEANSLATL SIGSGHAASS  360
SHRQPLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-471452483106B3 domain-containing transcription factor LEC2
6j9c_D1e-471452483106B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852434.10.0PREDICTED: B3 domain-containing transcription factor LEC2 isoform X1
TrEMBLA0A2I4H8F80.0A0A2I4H8F8_JUGRE; B3 domain-containing transcription factor LEC2 isoform X1
STRINGEOY282061e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-39B3 family protein