PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00018444-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YB

Protein Properties

Length: 136aa MW: 15470 Da PI: 4.5276

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018444-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	159.8	4e-50	4	98	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 eq+r+lPianv+rimk++lPa akisk+aket+qec +efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y e++ yl kyre+e+ WALNUT_00018444-RA 4 EQERLLPIANVGRIMKQILPATAKISKEAKETLQECSTEFISFVTAEASDKCHKENRKTVNGDDICWALSTLGFDNYSEAMVRYLYKYREAER 96 89******************************************************************************************9 PP NF-YB 96 ek 97 +k WALNUT_00018444-RA 97 QK 98 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-50	3	132	IPR009072	Histone-fold
SuperFamily	SSF47113	1.04E-38	5	127	IPR009072	Histone-fold
Pfam	PF00808	6.1E-26	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.1E-18	36	54	No hit	No description
PRINTS	PR00615	9.1E-18	55	73	No hit	No description
PRINTS	PR00615	9.1E-18	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MDDEQERLLP IANVGRIMKQ ILPATAKISK EAKETLQECS TEFISFVTAE ASDKCHKENR 60 KTVNGDDICW ALSTLGFDNY SEAMVRYLYK YREAERQKPD QNKAGSSNPD QDKQQLEESN 120 YGNDQLGKQN NEDPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-39	4	93	3	92	Transcription factor HapC (Eurofung)
4g92_B	1e-39	4	93	3	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018845882.1	1e-98	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	2e-55	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A2I4GPR2	2e-97	A0A2I4GPR2_JUGRE; nuclear transcription factor Y subunit B-4-like
STRING	cassava4.1_026425m	9e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	1e-57	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]