PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018397-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 386aa    MW: 43462.3 Da    PI: 7.5509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018397-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53211481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL+ kv + +++    i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+e
  WALNUT_00018397-RA  21 LPPGFRFHPTDEELITFYLASKVFNGSFRG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDRE 110
                         79*************************999.45***************8888899************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  WALNUT_00018397-RA 111 VYSAsSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148
                         **9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6316170IPR003441NAC domain
PROSITE profilePS5100560.17921170IPR003441NAC domain
PfamPF023651.5E-2722148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLTMEEVLRE LAGEDMNERG LPPGFRFHPT DEELITFYLA SKVFNGSFRG VEIAEVDLNR  60
CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK MGEKKNPFLQ  180
GQSYLLEALS SPNRTCLPPL LETPTTLLEC QFQTPIMQGI QNPLLINSQE NDLIKSLIHP  240
VVSQSHLFPR NNGFQPSFAA NPTTVTGTTV ATNKSTNTNN NPSPLPLPSM LFKSLLSHQD  300
GSSFKEHIAI QKQCKTEANF SHFQLPANAN LQWMDRVHPS TNQYQNSLLS EIDCGLLGFS  360
AFASAPAADA TITDTSTSIA FNRAGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-511617012165NO APICAL MERISTEM PROTEIN
1ut4_B6e-511617012165NO APICAL MERISTEM PROTEIN
1ut7_A6e-511617012165NO APICAL MERISTEM PROTEIN
1ut7_B6e-511617012165NO APICAL MERISTEM PROTEIN
3swm_A6e-511617015168NAC domain-containing protein 19
3swm_B6e-511617015168NAC domain-containing protein 19
3swm_C6e-511617015168NAC domain-containing protein 19
3swm_D6e-511617015168NAC domain-containing protein 19
3swp_A6e-511617015168NAC domain-containing protein 19
3swp_B6e-511617015168NAC domain-containing protein 19
3swp_C6e-511617015168NAC domain-containing protein 19
3swp_D6e-511617015168NAC domain-containing protein 19
4dul_A6e-511617012165NAC domain-containing protein 19
4dul_B6e-511617012165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860620.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-108NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2I4HWS80.0A0A2I4HWS8_JUGRE; protein CUP-SHAPED COTYLEDON 3-like
STRINGEOY159120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-107NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]