PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018283-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 679aa    MW: 77907.7 Da    PI: 7.862
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018283-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-2062155190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a l+++k++     +w+vt + ++HnH
  WALNUT_00018283-RA  62 EFYSEFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPIKTSSESKPQRNRKSSRCGCQAYLRISKTTelgAPEWRVTGFANHHNH 152
                         6**************999887735667799***************999999********************99888889************ PP

                FAR1  88 ela 90 
                         el 
  WALNUT_00018283-RA 153 ELL 155
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1762155IPR004330FAR1 DNA binding domain
PfamPF105511.7E-19278369IPR018289MULE transposase domain
PROSITE profilePS509669.681556589IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-7560587IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSEEAGPMLV VYDDPSDQRS LSLDDSSSTE ESPDETRLSL ETTNDAIPFI GQRFATHDSA  60
YEFYSEFAKR CGFSIRRHRT EGKDGIGKGL TRRYFVCHRA GNTPIKTSSE SKPQRNRKSS  120
RCGCQAYLRI SKTTELGAPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DTDKGRILMF  180
AKTGISVHQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE  240
KDPNFRFEYT LDSNHRLENI AWSYASSVHS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN  300
NYGMPCFFGC VLLHEENLRS FSWALKAFLG FMNGKAPQTI LTDQNMCLKE AITIEMTTTK  360
HALCIWMIVA KFPSWFNAVL GERYNEWKAD FFRLYNLETV DDFDLGWRDM VNSFGLHTNR  420
HIANLYGLRS LWALPFLRSH FFAGMTTTGQ SKTINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQTGEQQT MQQNLQNICL KTGAPMESHA ATMLTPFAFS KLQEQLVLAA HYASFHVDDG  540
FLVRHHTKTE GGRKVYWVPR EGIISCSCHH FEFSGILCRH ALRVLSTGNC FQIPDRYLPI  600
RWRRISTPSA KLLQSTPSDH AERIQFLQSM VSTLVTESTK SKERLDVAIE QVSIVLSRVR  660
EQPVSLQGMR DVSSIHRSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018854991.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_018855057.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2I4HFP40.0A0A2I4HFP4_JUGRE; protein FAR1-RELATED SEQUENCE 11
STRINGEMJ263580.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]