PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017822-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HB-PHD
Protein Properties Length: 729aa    MW: 83484.2 Da    PI: 9.9575
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017822-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-105145551253
                         HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         +e L ++F++n  p ++ +e L+k+lgL+ ++V+ WF+N R+
  WALNUT_00017822-RA 514 VEKLRQVFAENELPPRAVKENLSKELGLDPEKVSKWFKNARY 555
                         789*************************************97 PP
2PHD35.52.3e-12244299151
                         SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ C+   +  +++++lCd +C+ +fH+kCl+++l+s+++p g   w+C+ C++k
  WALNUT_00017822-RA 244 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDSDNIPPGdqGWFCKFCECK 299
                         699999854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.95E-13236301IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.5E-11241300IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211242299IPR019787Zinc finger, PHD-finger
PfamPF006281.3E-9244299IPR019787Zinc finger, PHD-finger
CDDcd155044.45E-31244296No hitNo description
SMARTSM002498.9E-8244297IPR001965Zinc finger, PHD-type
PROSITE patternPS013590245296IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007111.677500560IPR001356Homeobox domain
SuperFamilySSF466893.72E-10502563IPR009057Homeodomain-like
SMARTSM003895.0E-8502564IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-11502554IPR009057Homeodomain-like
CDDcd000861.30E-8503564No hitNo description
PfamPF000461.3E-7514555IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MHKIDMRGTG KKLIYQESGK SCYSKAESGS KLIASLKFKK GRNISHCRKH KPKSKSHVKT  60
IGSTLSKRSV TDPASREPKN DSIRRRFFRR KVLRKPTDSK SSRKNSPLGL QGEKALPNIS  120
KGKRKNVDGE VKITNLKKRK KKRRQKHSVE LDEASRLHRR TRYLLIKMKL EQNLIDAYSG  180
EGWKGQSREK IKPEKELQRA KKQILNCKLG IRDAIRQLDS LSSEGCIEDS VIAPDGSVYH  240
EHIFCAKCKL REAFPDNDII LCDGTCNCAF HQKCLDPPLD SDNIPPGDQG WFCKFCECKM  300
DILEVVNAHL GTHFSMNSNW QDVFKEEAAF PNGENAILDP EEEWPSDDSD DDDYNPERRE  360
NSSMISGAES DDNVSDDISS STSLSWSLDV EFFSGKEGMV CENHFANNGL DSDESTDGGI  420
ICGPRQRRAV DYKKLYDEMF GKDASAFEPV SEDEDWGPAK RKRREKESDA ASTLMTLYES  480
EQKRQNSETK ELKKKLPLET STRRPFFRIP HIAVEKLRQV FAENELPPRA VKENLSKELG  540
LDPEKVSKWF KNARYLALKY RKEETGKQLR SFKESRLEKL KKKADNVMVS NDTSAEIMIH  600
SPKNVKKVFH RKSPKSLGRV LKQKRQKRSS FMSPANGKKD TVEFNDDVSL KKLLEARTKE  660
RKRISVMARG GCQAAEVEME RLCKVMGRLE TIKLKLLRLQ NENARDSDKS HLFQESVIYV  720
PIAELREKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122141KRKNVDGEVKITNLKKRKKK
2122143KRKNVDGEVKITNLKKRKKKRR
3136140KKRKK
4137143KRKKKRR
5137144KRKKKRRQ
6139143KKKRR
7140145KKRRQK
8460465RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836622.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
RefseqXP_018836623.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487851e-163PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2I4FY990.0A0A2I4FY99_JUGRE; pathogenesis-related homeodomain protein-like isoform X1
STRINGEMJ257220.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-163pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]