PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017271-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 327aa MW: 36737.6 Da PI: 4.7507

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017271-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.7e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k WALNUT_00017271-RA 58 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 111 566899***********************************************9 PP
2	HD-ZIP_I/II	128.8	2.2e-41	57	149	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk +y+ lk + ++L++++e+L +e+ WALNUT_00017271-RA 57 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKGNYEGLKLNYDALQHDNEALLKEI 147 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ke WALNUT_00017271-RA 148 KE 149 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-19	43	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	53	113	IPR001356	Homeobox domain
SMART	SM00389	8.6E-18	56	117	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-16	58	111	IPR001356	Homeobox domain
CDD	cd00086	1.15E-16	58	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-20	60	119	IPR009057	Homeodomain-like
PRINTS	PR00031	9.4E-6	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.4E-6	93	109	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-16	113	154	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MKRSLGSSDS LGALISICPT AEEHSPRNNH VYSREFQSML DGLDEEGCVE ETGHIAEKKR 60 RLSVDQVKAL EKNFEVENKL EPDRKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 VLKGNYEGLK LNYDALQHDN EALLKEIKEL KAKLEKENAG STLSVKEEMF VHESDDQPME 180 QSKSAPDTPP LPASDSKDLH FDCLNHNING VGASLFQVDF KDGSSDSDSS AILNEDNSPN 240 AAISSSGGFL QNQQLLMSPA SSSLKFNCSS SSPSSSSITC FQFQKPFQTQ YVKTEEHNFF 300 SGEEACNIFS DEQAPTLQWY YPDPQWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018818036.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A2I4EF61	0.0	A0A2I4EF61_JUGRE; homeobox-leucine zipper protein ATHB-6-like
STRING	POPTR_0007s05010.1	1e-157	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-66	homeobox protein 6