PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017195-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 43136.4 Da PI: 6.6975 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.4 | 4.8e-52 | 12 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deel+++yL+++v+++++++ ++i+e+d+yk++Pw+Lpkk+ +e+ewyfF++r++ky++g r+nra+ sgyWkatg+dk+ WALNUT_00017195-RA 12 LPPGFRFHPSDEELIHHYLRNQVTSSPIPA-SIIAEIDLYKYNPWELPKKALFGEDEWYFFTPRERKYPNGVRPNRAAGSGYWKATGTDKP 101 79****************************.89***************88888999*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ +++ g+kk Lvfykgr pkg+ktdW+mheyrl WALNUT_00017195-RA 102 ILTScGTKSNGVKKALVFYKGRPPKGVKTDWIMHEYRL 139 **9977888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-62 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.125 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-26 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MEEKPPHSDI QLPPGFRFHP SDEELIHHYL RNQVTSSPIP ASIIAEIDLY KYNPWELPKK 60 ALFGEDEWYF FTPRERKYPN GVRPNRAAGS GYWKATGTDK PILTSCGTKS NGVKKALVFY 120 KGRPPKGVKT DWIMHEYRLH DSMTWTAKRK GSMRLDDWVL CRVRKKSGML RNTREDHRNG 180 TPSYEPATEP YFQPVLEEPR SMNMMNPNLF AAVRNYLYND CPMLPYIFAS QEIPSNSMHN 240 TTSSSCISFP STRSINGTSC PSSFLEDDTN IVKESQYFDV SSSSNNFLNP LKRIISLEAG 300 NHDDEIRGGF FPPSKISCNG SDDHSMGIMK FCGTDHLQDN NLEADQWSTS QLVQYQEFDN 360 HLVFTHCEQG TNGEKDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-67 | 1 | 166 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-67 | 1 | 166 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-67 | 1 | 166 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-67 | 1 | 166 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-67 | 1 | 166 | 9 | 168 | NAC domain-containing protein 19 |
3ulx_A | 2e-67 | 3 | 167 | 6 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-67 | 1 | 166 | 6 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-67 | 1 | 166 | 6 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847815.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
TrEMBL | A0A2I4GV87 | 0.0 | A0A2I4GV87_JUGRE; NAC domain-containing protein 2-like | ||||
STRING | EOY07798 | 1e-129 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-79 | NAC-like, activated by AP3/PI |