PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017149-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 392aa MW: 44655.7 Da PI: 6.3971 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.7e-14 | 196 | 247 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ WALNUT_00017149-RA 196 QRMTHIAVERNRRRQMNDHLNVLRSLMPTP---YIQRGDQASIIGGAIDFVKELE 247 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-16 | 187 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-12 | 194 | 251 | No hit | No description |
PROSITE profile | PS50888 | 15.758 | 195 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-11 | 196 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-14 | 196 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 201 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MRFFGEHSEA DCLEQEFVLT DSLKFEEQEP HFSTPMLEEK MPFLQMLQSV GSPHFLPYKE 60 PNFQTLLRLQ HRKKPWDGYT YNIPEMETQI QALELESCVT HDIVELHSPV KSVTMDLRQP 120 HSASCLEATV SSECNQEPNH CIELGASAGS PPPWPNPPPQ SWPKQTYLPK SLPLARERRK 180 RKRTRPTKNQ EEVESQRMTH IAVERNRRRQ MNDHLNVLRS LMPTPYIQRG DQASIIGGAI 240 DFVKELEQLL HSLEAQKRMR KNQEGVEGSG AMDAPSNGLF MSPQCRNAST EEGHRGEEVK 300 SDNKSEDAEI QVTVIQTHVN MKIQCQRKPG QLLKAIVALE ELRLTVLHLN ITSSEASILY 360 SLSLKIEDEC KLGSANEIAS AVQQIWSFIS RS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | RRKRKR |
2 | 196 | 207 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689430 | 3e-74 | KP689430.1 Prunus pseudocerasus isolate Unigene20562 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808973.1 | 0.0 | PREDICTED: transcription factor bHLH67-like | ||||
TrEMBL | A0A2I4DP98 | 0.0 | A0A2I4DP98_JUGRE; transcription factor bHLH67-like | ||||
STRING | EMJ19239 | 1e-153 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 6e-81 | bHLH family protein |