PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017109-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 208aa MW: 22707.8 Da PI: 8.4966

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017109-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.3	5e-33	41	133	5	93
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasecea 75 k +++++hTkv+gRdRR+Rl+ caar+F+L++eLG+++d++tieWLl+qa+p+i++ g+ +a WALNUT_00017109-RA 41 KAPSKDRHTKVNGRDRRIRLPPICAARVFQLTRELGYKTDGETIEWLLRQAQPSIIATIGStinggvassaatfgpsanttI-------DA 124 7899*********************************************************898877655553322222220.......22 PP TCP 76 esssssasnsssgkaaks 93 +s+ ss s WALNUT_00017109-RA 125 VSNISSCP---------S 133 22222222.........1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.4E-29	44	143	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.119	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MELEKINDLE MKLSSSSNNQ PTPNSQPIAT SASKAKLLPC KAPSKDRHTK VNGRDRRIRL 60 PPICAARVFQ LTRELGYKTD GETIEWLLRQ AQPSIIATIG STINGGVASS AATFGPSANT 120 TIDAVSNISS CPSSTSSKFP CVAETVHENR DHVVNKCAFR RPKPVLLPFE FGLVSNFDME 180 FSANEIAMLQ SVTDIEEGAK EKDPQKKF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018815414.1	1e-145	PREDICTED: transcription factor PCF1-like
TrEMBL	A0A2I4E7P1	1e-144	A0A2I4E7P1_JUGRE; transcription factor PCF1-like
STRING	EOY34434	4e-53	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	4e-30	TCP family protein