PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017075-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 484aa MW: 53831.7 Da PI: 6.3856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 314 | 359 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L WALNUT_00017075-RA 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 359 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-52 | 26 | 210 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.015 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-17 | 311 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.42E-14 | 313 | 363 | No hit | No description |
Pfam | PF00010 | 6.6E-10 | 314 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 314 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-15 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MEDLIISPSS SSSLVSNLPQ EAPPTLQQRL QFIVQSQPEW WAYAIFWQTA NDDNGHVFLA 60 WGDGHFHGNK DTSRKLSHSN NTHPIPVLHS ERKNFMRDIQ SMIGESNQDI DNMSINADVS 120 DAEWFYIMSL TRSFSAGEGV PGRAYSTNSL VWLTGGRDLQ FYNCERAKEA QMHGIETLIC 180 IPTSSGVLEM GSPNIIRENW GLAQQAKSLF GTDLVGMLPR QQSPSSGPIQ FLERNISFAD 240 IGIIAGVPGD DNSGEEKKKG AIGGKKQSIK GGQSPYVDSE HSDSDCPLIA LNVEKRTPKK 300 RGRKPGLGRD TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYINELK 360 TKIDELESQL QRDSKKVKLE LADTMDNQST TTSVNQTRPN SSGFALEVEV KIVGVDAMIR 420 VQSENVNYPA ARLMCALRDL EFQVHHASMS CVNELMLQDA VVKVPDGLRS EEGLKTALLR 480 RLEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-37 | 19 | 210 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-37 | 19 | 210 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-37 | 19 | 210 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-37 | 19 | 210 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805267.1 | 0.0 | PREDICTED: transcription factor MYC2 | ||||
TrEMBL | A0A2I4DDN6 | 0.0 | A0A2I4DDN6_JUGRE; transcription factor MYC2 | ||||
STRING | EOX95614 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46830.1 | 1e-76 | NACL-inducible gene 1 |