PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016982-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 233aa MW: 25421.3 Da PI: 10.6289 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 229.5 | 2.7e-70 | 72 | 233 | 136 | 301 |
GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 +++ + ++ k++ k++++ k+ + k++kk++ k++k ++++ e ++++k ++ +++ ++D s++P+P CsCtG+ r CYkWG WALNUT_00016982-RA 72 DSATKPAKGRKLKNSVKGSNQVASKVFRPKQTKKTP-KTTKGKSMP---EGKREKKILNNIHMEKADFDFSRVPPPYCSCTGVARLCYKWG 158 222333333333444444444444444444444433.222222222...2345555567899***************************** PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +GGWqS+CCt+++S yPLP+s++r+gaR+agrKmS+ga+ klL +LaaeG dl +pvDLkdhWA+HGtnkfv i+ WALNUT_00016982-RA 159 AGGWQSSCCTINLSEYPLPMSSTRPGARVAGRKMSNGAYGKLLLRLAAEGCDLTHPVDLKDHWARHGTNKFVIIK 233 ************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 5.0E-63 | 22 | 233 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 6.7E-65 | 77 | 233 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGTYSNRNPM IPEATAGASV PHFTWFYPGS FLSASKTSSN PFQGVQLNAQ PSLPVGPIRT 60 IAVTPEPVND IDSATKPAKG RKLKNSVKGS NQVASKVFRP KQTKKTPKTT KGKSMPEGKR 120 EKKILNNIHM EKADFDFSRV PPPYCSCTGV ARLCYKWGAG GWQSSCCTIN LSEYPLPMSS 180 TRPGARVAGR KMSNGAYGKL LLRLAAEGCD LTHPVDLKDH WARHGTNKFV IIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018843904.1 | 1e-175 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Refseq | XP_018843905.1 | 1e-175 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Refseq | XP_018843906.1 | 1e-175 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Refseq | XP_018843907.1 | 1e-175 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Refseq | XP_018843908.1 | 1e-175 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Refseq | XP_018843909.1 | 1e-175 | PREDICTED: protein BASIC PENTACYSTEINE7-like | ||||
Swissprot | O82286 | 1e-66 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A2I4GJ26 | 1e-173 | A0A2I4GJ26_JUGRE; protein BASIC PENTACYSTEINE7-like | ||||
STRING | cassava4.1_015308m | 1e-112 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16430 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 8e-66 | basic pentacysteine 7 |