PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016767-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 331aa    MW: 36125 Da    PI: 6.7827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016767-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17225259135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  WALNUT_00016767-RA 225 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 259
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-8216309IPR016679Transcription factor, GATA, plant
SMARTSM004011.9E-16219269IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.347219255IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-14220256IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.76E-14220282No hitNo description
CDDcd002022.05E-12224271No hitNo description
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
PfamPF003208.0E-15225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELPELFMGD CFGAGAGPLS PEKQKPGENF TVDDLLDFSN EDAVMTDGFF ENVAGNSNDS  60
STVTAVDSCN SGNGAQLSGI FGSRTFGDSQ FSGDLFVPYD DLAELEWLSN FVEDSFSVQQ  120
GLHFLTGPTN ATATKPHTPE SSSSSETLPT RNVPLFQPET PLPGKARSKR SRAAPCDWST  180
RLLHLTTPSE ADTPIEKPSS ATTKTTPSKK RESKQNDSDS SGRKCLHCAA EKTPQWRTGP  240
MGPKTLCNAC GVRYKSGRLV PEYRPVASPT FVSAKHSNSH RKVLELRRQK EVYRTQQQQF  300
LSRGSIFGVS NGGGDDYLIH HRSGPDFRHL I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839154.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A2I4G5H60.0A0A2I4G5H6_JUGRE; GATA transcription factor
STRINGXP_010098128.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-82GATA transcription factor 9