PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016708-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31801.3 Da    PI: 9.3012
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016708-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.8e-2959109151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                         krien   rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++ klye+ss
  WALNUT_00016708-RA  59 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSQSEKLYEFSS 109
                         79***********************************************96 PP
2K-box59.81.1e-201512391198
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         +++  + + e+  L k++e L+ ++R+l Ge+ Le +s+ eLq++e+qL++sl kiR++Kn+l++eq+e+l+k e+  +een +Lr+k 
  WALNUT_00016708-RA 151 QQHLIKKDYESVSLAKKLEILEVSKRRLAGEGnLELCSVDELQEVENQLQRSLCKIRARKNQLFTEQVEQLRKEERCRREENAKLRQKC 239
                         4455566778899******************55******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.72651111IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-3951110IPR002100Transcription factor, MADS-box
PROSITE patternPS00350053107IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-295373IPR002100Transcription factor, MADS-box
CDDcd002653.36E-3953119No hitNo description
SuperFamilySSF554554.32E-3153127IPR002100Transcription factor, MADS-box
PfamPF003199.8E-2660107IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-297388IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-2988109IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.3154245IPR002487Transcription factor, K-box
PfamPF014867.4E-19159239IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MFTVVHLQAS IHLECSPDGE VDVLCPRCAN IRERHQDFHA SKRKFSQVPE MVRGKTQMKR  60
IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSQ SEKLYEFSSS GVSKTIERYW  120
KRTKVDDPIS MGVSFHNYAG SVTGKSQENL QQHLIKKDYE SVSLAKKLEI LEVSKRRLAG  180
EGNLELCSVD ELQEVENQLQ RSLCKIRARK NQLFTEQVEQ LRKEERCRRE ENAKLRQKCG  240
MQPAVVHDPN HQSSNQQVLR SSSLDVETDL FIGPPKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-1853128274MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-1853128274MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-1853128274MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-1853128274MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
5f28_A2e-1851128175MEF2C
5f28_B2e-1851128175MEF2C
5f28_C2e-1851128175MEF2C
5f28_D2e-1851128175MEF2C
6byy_A2e-1851119169MEF2 CHIMERA
6byy_B2e-1851119169MEF2 CHIMERA
6byy_C2e-1851119169MEF2 CHIMERA
6byy_D2e-1851119169MEF2 CHIMERA
6bz1_A2e-1851119169MEF2 CHIMERA
6bz1_B2e-1851119169MEF2 CHIMERA
6bz1_C2e-1851119169MEF2 CHIMERA
6bz1_D2e-1851119169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820468.11e-165PREDICTED: agamous-like MADS-box protein AGL19 isoform X1
SwissprotO827434e-67AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A2I4EM451e-164A0A2I4EM45_JUGRE; agamous-like MADS-box protein AGL19 isoform X1
STRINGEOY245835e-75(Theobroma cacao)
STRINGXP_010272601.15e-75(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-69AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]