PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016559-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 478aa MW: 52577.9 Da PI: 7.8237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016559-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G g W+ I +++g +t+ q++s+ qk+ WALNUT_00016559-RA 56 REKWTEEEHQKFIEALRLYGRG-WRQIEAHVG-SKTAVQIRSHAQKF 100 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.61E-15	51	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.761	51	105	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-16	54	103	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-13	55	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-9	56	96	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-14	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	1.04E-10	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MAVQQNVTSN LSVTSCNYRS DGAARSEMVV QKEETGSFGN YNALKVRKPY TIVKQREKWT 60 EEEHQKFIEA LRLYGRGWRQ IEAHVGSKTA VQIRSHAQKF FSKVVRASSS SIENSIEPVE 120 IPPPRPKKKP SHPYPRKSLD SPNGISLTNQ TERSPLPNLL VAKKGTKSPT SVLSAAGSDS 180 LESAASEQQI ACSSPTSCAT DMQSISFSPV EKEKAHMTSN STVQEEKGSF SSTPEGFSSM 240 KFDFASKGTL STKGDEATGE PVTSIKLFGR TVVVTDSRKP CYPGTGNTES LISNIRVENS 300 AVDKGDFVKR LPSDQLDVHL SLEIDNCKSM LLPCQAPVKS VEHLKENINS VEANPCVSLP 360 WWSLYQGQPF CYFPSYNQTS VQVPTGSYVE VDTMEGEVMK ERSCTSSNSA SVSEVENGEK 420 NSDAIDSESQ KPLRKGRISP CNSMRGFVPY KRCLAERDTN SSMVDMDERE GQRARVCS

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MAVQQNVTSN LSVTSCNYRS DGAARSEMVV QKEETGSFGN YNALKVRKPY TIVKQREKWT  60
EEEHQKFIEA LRLYGRGWRQ IEAHVGSKTA VQIRSHAQKF FSKVVRASSS SIENSIEPVE  120
IPPPRPKKKP SHPYPRKSLD SPNGISLTNQ TERSPLPNLL VAKKGTKSPT SVLSAAGSDS  180
LESAASEQQI ACSSPTSCAT DMQSISFSPV EKEKAHMTSN STVQEEKGSF SSTPEGFSSM  240
KFDFASKGTL STKGDEATGE PVTSIKLFGR TVVVTDSRKP CYPGTGNTES LISNIRVENS  300
AVDKGDFVKR LPSDQLDVHL SLEIDNCKSM LLPCQAPVKS VEHLKENINS VEANPCVSLP  360
WWSLYQGQPF CYFPSYNQTS VQVPTGSYVE VDTMEGEVMK ERSCTSSNSA SVSEVENGEK  420
NSDAIDSESQ KPLRKGRISP CNSMRGFVPY KRCLAERDTN SSMVDMDERE GQRARVCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018849093.1	0.0	PREDICTED: protein REVEILLE 7-like isoform X2
TrEMBL	A0A2I4GYX7	0.0	A0A2I4GYX7_JUGRE; protein REVEILLE 7-like isoform X2
STRING	EOY21570	1e-142	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7313	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	5e-49	MYB_related family protein