PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016416-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 359aa    MW: 40498.1 Da    PI: 5.6182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016416-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.5e-28132192259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK++ g+++prsYYrCt +   +C+++k+v+rs++dp++++itY+g+H+++
  WALNUT_00016416-RA 132 EDGYTWRKYGQKDILGAKYPRSYYRCTLRnsqNCWATKQVQRSDDDPNAFDITYRGRHTCS 192
                         8**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27124193IPR003657WRKY domain
PROSITE profilePS5081122.389126189IPR003657WRKY domain
SuperFamilySSF1182902.88E-25130193IPR003657WRKY domain
SMARTSM007741.3E-38131193IPR003657WRKY domain
PfamPF031066.8E-26132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MENGWSWEQK PLIGELIQGM ELVKQLRVQF STTTSSPETV ETLLQRILAS YEKALMILRW  60
SGSIGQPQIE GVMAGVPGSP ISVNGSLGTD EFDKGIKDHQ GTDDISKKRK ILPRWTDHVR  120
VRSENGMEGP HEDGYTWRKY GQKDILGAKY PRSYYRCTLR NSQNCWATKQ VQRSDDDPNA  180
FDITYRGRHT CSHATNLVPA SPSPEKQEQK QYNNNNHNEQ ERPLDILRDI RSSLRIVTED  240
LDSKEITYPF SFPSTSFGCM NSENNGFSLS ALDRNTLLDC FSSPFLSPAT PESNYFAVSP  300
LEKSNFGGVH NEHHFESELT KIISAKASAT SSPVLDLDFS LHPVEIEPNF PFDSQPFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19132191968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815563.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2I4E8450.0A0A2I4E845_JUGRE; probable WRKY transcription factor 53
STRINGPOPTR_0003s13840.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-62WRKY family protein