PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016393-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 304aa    MW: 33201.5 Da    PI: 8.8785
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016393-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.6e-19232265134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  WALNUT_00016393-RA 232 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 265
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.662226262IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-15226276IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15229288No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14230263IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.06E-14231288No hitNo description
PfamPF003201.3E-16232265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSGSSLLNEN LNGISDFDDF FKFLDFPLED VEGNVGEDWN AKLELLDPPS IDVLAGLSPG  60
FSGKTSNDSS KCPENLSAPC YETSPLEVLP VTAEATSNRS IVLHKASDGK GLRLFQTSSP  120
ISVLESSSSC SVENPTTVEP KIISAVKRAR SKRSRPRQPN FNRKSVIPFF SSSPKLSHPS  180
ASFESGSETD LTETVSNPSK RKLRKKKNLT VLSGATETMD HSSQGPVATR KCMHCEVTKT  240
PQWREGPMGP KTLCNACGVR YRSGRLFPEY RPMASPTFVP SVHSNSHKKV IEMRSKASLV  300
AETF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844308.10.0PREDICTED: GATA transcription factor 10-like
RefseqXP_018844309.10.0PREDICTED: GATA transcription factor 10-like
TrEMBLA0A2I4GK910.0A0A2I4GK91_JUGRE; GATA transcription factor 10-like
STRINGGorai.003G142600.12e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-40GATA family protein