PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016233-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 381aa MW: 42396.8 Da PI: 7.9131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016233-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	226	271	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h++ rRR+++ ++ + Lr+l+P++ +K++ a++Le+A +Y+k Lq WALNUT_00016233-RA 226 HSKLASRRRQKLSEKTQSLRKLMPWD-----TKMDMATMLEEAHKYVKFLQ 271 778889*****************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.484	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-11	222	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.00E-10	224	275	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-10	226	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	226	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MERGFDTSFA GGEGCEEGSF NSMFSGVSLQ SLLTDNTLLP FYADYFPLED VNSKPTTTTS 60 FPFSFFSEDY PSTHNCHRLG VGGAPLNFNN NEDSEDNKKL KLPKSEPLAY EQFDAESTHA 120 HEPFHFLTNS PVLSHDQLKC SSVFPHLPLL QSLEHSHSQP QPQPQLFPSA SVSPSKRLRL 180 DSTTSTNSQT LESIVQSCYR YHVPSLNLNL NPSTVVLSSQ PAVMPHSKLA SRRRQKLSEK 240 TQSLRKLMPW DTKMDMATML EEAHKYVKFL QAQVKALQTM PSSSSFSAFT PAQSLYSGVF 300 GGLGRLTRNQ ILQVLVNSPV AQTMLYSQGC CVFAAEQMAL LGKIAERKLL FQQQKQKQQQ 360 NVAFNHSSTS SSSTSRGFFL P

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MERGFDTSFA GGEGCEEGSF NSMFSGVSLQ SLLTDNTLLP FYADYFPLED VNSKPTTTTS  60
FPFSFFSEDY PSTHNCHRLG VGGAPLNFNN NEDSEDNKKL KLPKSEPLAY EQFDAESTHA  120
HEPFHFLTNS PVLSHDQLKC SSVFPHLPLL QSLEHSHSQP QPQPQLFPSA SVSPSKRLRL  180
DSTTSTNSQT LESIVQSCYR YHVPSLNLNL NPSTVVLSSQ PAVMPHSKLA SRRRQKLSEK  240
TQSLRKLMPW DTKMDMATML EEAHKYVKFL QAQVKALQTM PSSSSFSAFT PAQSLYSGVF  300
GGLGRLTRNQ ILQVLVNSPV AQTMLYSQGC CVFAAEQMAL LGKIAERKLL FQQQKQKQQQ  360
NVAFNHSSTS SSSTSRGFFL P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846401.1	0.0	PREDICTED: uncharacterized protein LOC109010138
TrEMBL	A0A2I4GR73	0.0	A0A2I4GR73_JUGRE; uncharacterized protein LOC109010138

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13426	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	8e-24	bHLH family protein