PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00015704-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WRKY

Protein Properties

Length: 311aa MW: 35013.9 Da PI: 8.0628

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00015704-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.4	5.9e-33	174	231	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v++tYeg+Hnh+ WALNUT_00015704-RA 174 EDGYRWRKYGQKAVKNSPYPRSYYRCTSPKCIVKKRVERSFQDPSTVITTYEGKHNHH 231 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-34	158	233	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-29	166	233	IPR003657	WRKY domain
PROSITE profile	PS50811	32.237	168	233	IPR003657	WRKY domain
SMART	SM00774	3.1E-37	173	232	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	174	231	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSEEDKNLYN HHGSFGYHRQ EINQSSFPFI NDNPSIQTKN QQGFDPTSYM SFTDCLHGSM 60 DYNALSTAFG MSCSSSEVIS PTDENWKNVG VEKSSATGEN LPTPNSSVSC SSNELGTGEE 120 ESVKSKKEKQ PQLCEDGAKD QKSKKAISNK PKKEKRQREP RVAFLTKSEI DHLEDGYRWR 180 KYGQKAVKNS PYPRSYYRCT SPKCIVKKRV ERSFQDPSTV ITTYEGKHNH HCPANLRGNA 240 TGMLPTFLAS ASVGPSFPQA SLFSQLLPTN NQVDLNSLFY RNLITQQQLQ LDPDHGLLQD 300 LVPSFRNEQQ P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-30	166	234	10	78	Probable WRKY transcription factor 4
2lex_A	2e-30	166	234	10	78	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	157	KEKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836807.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	2e-60	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A2I4FYT8	0.0	A0A2I4FYT8_JUGRE; probable WRKY transcription factor 28
STRING	POPTR_0005s22480.1	1e-109	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-51	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]