PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00015566-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 16852.1 Da PI: 7.414 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 51.2 | 3.7e-16 | 14 | 64 | 48 | 98 |
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +++e++r d+++slvyeA+ r+rdP++G++g i++lqqq+++l+ el++++ WALNUT_00015566-RA 14 EVSESQRADVANSLVYEANLRLRDPIHGCMGAISALQQQIQSLQGELNEVR 64 67999******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.571 | 1 | 67 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-14 | 14 | 64 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence Send to blast |
MQPILACLNV QRAEVSESQR ADVANSLVYE ANLRLRDPIH GCMGAISALQ QQIQSLQGEL 60 NEVRTLMMRH KFREVIGNNI SSSTTTAADL VSSRVPAVSI ASAPPPQTLP PQPVLSPLPF 120 AVPSLSSSSS SSSLYTPRPA STTGYSSIIL SGNVPYFD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092113.1 | 6e-39 | LOB domain-containing protein 15-like | ||||
TrEMBL | A0A2I4F9X3 | 3e-35 | A0A2I4F9X3_JUGRE; LOB domain-containing protein 15-like | ||||
STRING | Solyc06g007390.2.1 | 2e-32 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-17 | LOB domain-containing protein 13 |