PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00015324-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 735aa MW: 80191.9 Da PI: 6.509 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.2 | 8.7e-25 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F WALNUT_00015324-RA 149 FCKTLTASDTSTHGGFSVPRRAAEDCfpaldyK-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSGFVNKKKLVSGDAVLFL-- 236 99****************************963.3445679************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+++++r+ WALNUT_00015324-RA 237 RGEDGELRLGIRRA 250 449999*****996 PP | |||||||
2 | Auxin_resp | 109.6 | 3.2e-36 | 275 | 360 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnP....rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+s+F++++nP ras+seF+++++k++k+l++++svGmRfkm+fe ed++err++G+v+g+ d+dpvrWp+SkWr+L WALNUT_00015324-RA 275 VINAISTRSTFNIYHNPsissRASSSEFIIPLRKFLKSLQHSFSVGMRFKMRFEAEDAAERRYTGLVTGIGDMDPVRWPGSKWRCL 360 5799*************77777899************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-40 | 139 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-43 | 142 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.82E-22 | 147 | 249 | No hit | No description |
PROSITE profile | PS50863 | 13.352 | 149 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-23 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-23 | 149 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-31 | 276 | 360 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 735 aa Download sequence Send to blast |
MGLIDLNTTE DDETPSSGSS ASSWCSASVL SASASASASS VCLELWHACA GPLISLPKKN 60 SVVVYFPQGH LEQVPDFPLA AYDLPPHVFC RVTDVKLHAE EGTDEVYAQV ALVPENEQFE 120 HKLQEGEVDA EGEEDDADVA AKSSTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPALDY 180 KQQRPSQELV AKDLHGLEWR FRHIYRGQPR RHLLTTGWSG FVNKKKLVSG DAVLFLRGED 240 GELRLGIRRA AQVKGSGSFS ALCSRQMNHG SLMDVINAIS TRSTFNIYHN PSISSRASSS 300 EFIIPLRKFL KSLQHSFSVG MRFKMRFEAE DAAERRYTGL VTGIGDMDPV RWPGSKWRCL 360 LVRWDDVETR HNRVSPWEIE PSSSLSGSTS LMAPGSKRTR IGFPLGKLEF PIPNGIGVSD 420 FGESLSFQKV LQGQEILGFT HDGIDTHNLQ YLRTSETRRC IPGSNGSGIA AIGDGVRNPI 480 VNSDISYKGM GFGESLRFQK VLQGQEIFPS LPYERAPSTN EAHGNGGLGI LDGVQVMSSW 540 NGWPGMMRGN NTTMCPFSPP MQASSPSSVL MFQQATNPVS NLGSMDKFNS LEDQRISNQS 600 LSVSEEIGGK LTASSLYEHN FRRKDQGGTN SSSFEHNQLV STLPPLATQS TFEGSQDLVP 660 TCKSSCRLFG FSLTEGKHVA NTEDSTPASS PLNPGASFLP HVGDQFHPKP PSLMTKAVGT 720 ACTEVSNLYA VRYAF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-112 | 38 | 388 | 16 | 361 | Auxin response factor 1 |
4ldw_A | 1e-112 | 38 | 388 | 16 | 361 | Auxin response factor 1 |
4ldw_B | 1e-112 | 38 | 388 | 16 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018838471.1 | 0.0 | PREDICTED: auxin response factor 3-like | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2I4G3I6 | 0.0 | A0A2I4G3I6_JUGRE; Auxin response factor | ||||
STRING | XP_002522498.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |