PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015151-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WRKY | ||||||||
Protein Properties | Length: 262aa MW: 29474.9 Da PI: 9.0987 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.3e-29 | 104 | 163 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+ ed++v++ tY geHnh+ WALNUT_00015151-RA 104 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKVQRCVEDKNVLVATYDGEHNHD 163 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-30 | 97 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.75 | 99 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-26 | 100 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.2E-34 | 104 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-24 | 105 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEAQMSTTSN DQKAMETLQA NSESLRKENE TLRFMLGVMN RKCNILQARL QARKAEQIMD 60 INLTHQSGSN NETNYKKART QFPAPNSTSR ILVRADSLDN SLIVKDGYQW RKYGQKVTKD 120 NPSPRAYFRC SMAPGCPVKK KVQRCVEDKN VLVATYDGEH NHDANANSHD VGDQYSLSSS 180 DRIGVAMTSS NSMHDISNHS PFRPAIALDL SLSGPNKENR RNYVEKDHQN NYYNKIEECV 240 ASLTKDPNFT ASLAAAVARS MY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 89 | 163 | 1 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018839593.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Refseq | XP_018839594.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2I4G6S6 | 0.0 | A0A2I4G6S6_JUGRE; probable WRKY transcription factor 40 | ||||
STRING | EOY29345 | 2e-77 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-44 | WRKY DNA-binding protein 40 |