PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015100-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 533aa    MW: 59320.4 Da    PI: 4.5867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015100-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.71.2e-1071565261374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevs 88 
                         lv+ Ll+cAeav  +d++la+++L+++   a+p g+++qR+  +++ +L++rl++ +  +   +++  +  ++    +e++ +++l+++++
  WALNUT_00015100-RA 156 LVHMLLSCAEAVGCRDTQLAESILSQVWASANPLGTSLQRVSYCVATGLKSRLSNlHNANANGTFTNGAMGKSLitREEKAESFQLLHQAT 246
                         689****************************************************433444444444444433376888899999****** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P+l f++++aN+aI +a++g++ +HiiD++++  lQWp+L+++L+sRpegpp+lRiTg+ s +  ++  le+  + L + A+++g+ +e++
  WALNUT_00015100-RA 247 PYLAFGFMAANEAICQAAQGKDSLHIIDLGMETTLQWPSLIRSLSSRPEGPPKLRITGLISDQ--NQLGLEASIKALMEDASSVGIILEIT 335
                         *************************************************************55..99************************ PP

                GRAS 180 vlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         +  ++  + + l+ e+L++++gEal Vn++++lh+ ++es  + +   ++L+++k+l P+ v+vveq+a+hn++ Fl rfle+l+yysa+f
  WALNUT_00015100-RA 336 M-KTDpvTPSLLTRENLNLREGEALFVNCIMHLHEYVKESRGSLK---AILQAIKKLAPTAVTVVEQDANHNGPFFLGRFLESLHYYSAIF 422
                         9.6664677899************************987776666...9****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         dslea+lpr+s +r+k+E   +++ei+n+va eg++r++rhe++ +Wr++l++aGFk + l  + ++qa+++l+ ++ dgy++  ++g+l+
  WALNUT_00015100-RA 423 DSLEATLPRHSAQRMKIEMLHFAEEIRNIVAFEGSDRIARHERVDQWRRQLGRAGFKVMGL--TCMSQARMMLSVYGCDGYTLATDKGCLL 511
                         **********************************************************998..58************************** PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         lgWk++p++ +SaW+
  WALNUT_00015100-RA 512 LGWKGKPIMLASAWQ 526
                         **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.397130508IPR005202Transcription factor GRAS
PfamPF035144.1E-105156526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MAAMNGWLSF PLDDSFNHDL AIRRFCPERV EQEQGAWELE WEEKLMNDEF EMCSPSDTTT  60
TPCLAASEVD DFVDSFINMD HCDKDCNNLL DEHQNFDHFH YEIETFPGVD DVYGDVSMMI  120
GDELEMSDSI EDLGVVPDEI MLGVEDSNGV DQGLHLVHML LSCAEAVGCR DTQLAESILS  180
QVWASANPLG TSLQRVSYCV ATGLKSRLSN LHNANANGTF TNGAMGKSLI TREEKAESFQ  240
LLHQATPYLA FGFMAANEAI CQAAQGKDSL HIIDLGMETT LQWPSLIRSL SSRPEGPPKL  300
RITGLISDQN QLGLEASIKA LMEDASSVGI ILEITMKTDP VTPSLLTREN LNLREGEALF  360
VNCIMHLHEY VKESRGSLKA ILQAIKKLAP TAVTVVEQDA NHNGPFFLGR FLESLHYYSA  420
IFDSLEATLP RHSAQRMKIE MLHFAEEIRN IVAFEGSDRI ARHERVDQWR RQLGRAGFKV  480
MGLTCMSQAR MMLSVYGCDG YTLATDKGCL LLGWKGKPIM LASAWQVHNV LSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6216352526378Protein SCARECROW
5b3h_A1e-6216352525377Protein SCARECROW
5b3h_D1e-6216352525377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847922.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4GVK40.0A0A2I4GVK4_JUGRE; DELLA protein RGL1-like
STRINGXP_004306565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-76RGA-like 1