PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014904-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MIKC_MADS

Protein Properties

Length: 267aa MW: 30519.8 Da PI: 8.6613

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014904-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.8	1.2e-27	18	68	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++ rqvtfskRr g++KKA ELS+LCdae+a+i+fsstgkl++y+s WALNUT_00014904-RA 18 KRIDNTTARQVTFSKRRRGLFKKALELSTLCDAEIALIVFSSTGKLFDYAS 68 79***********************************************86 PP
2	K-box	41.8	4.6e-15	154	215	35	96
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + +++Ge+L+ L+++eLq+Leq L+ sl ++ ++Kne +l++i+ l+ k +++ +en++L++ WALNUT_00014904-RA 154 NLKMKGEELQGLNVNELQELEQLLDASLGRVLETKNERFLKEISALKWKRDKMMDENQQLKQ 215 379*********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.053	10	70	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.1E-40	10	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.2E-27	11	73	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.75E-35	12	72	No hit	No description
PROSITE pattern	PS00350	0	12	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-27	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-24	19	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-27	32	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-27	47	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.164	124	225	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.9E-11	156	215	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGSDDFSGKM TRKKIQIKRI DNTTARQVTF SKRRRGLFKK ALELSTLCDA EIALIVFSST 60 GKLFDYASSR NNIFTITTTN HINVMHDLIV TFASRSKDRQ VIERHDLHSG RNLDKTNQPQ 120 SVELQLESTT YTLLSKEVVE KTHELRYYND IAINLKMKGE ELQGLNVNEL QELEQLLDAS 180 LGRVLETKNE RFLKEISALK WKRDKMMDEN QQLKQVENLL NVEAHLLGQG QPSELVTNIC 240 SSADPPHQDL HSSDTSLRLG LKAMKYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	10	69	1	60	MEF2C
5f28_B	1e-19	10	69	1	60	MEF2C
5f28_C	1e-19	10	69	1	60	MEF2C
5f28_D	1e-19	10	69	1	60	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826908.1	1e-145	PREDICTED: MADS-box protein JOINTLESS-like isoform X2
Swissprot	Q9FUY6	2e-69	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A2I4F5I2	1e-143	A0A2I4F5I2_JUGRE; MADS-box protein JOINTLESS-like isoform X2
STRING	XP_010254524.1	2e-74	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF890	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-53	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]