PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014897-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 642aa    MW: 69679.7 Da    PI: 4.5658
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014897-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.17.7e-16219255135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  WALNUT_00014897-RA 219 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 255
                         *****99999************************997 PP
2GATA44.62e-14497531133
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                         C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ k
  WALNUT_00014897-RA 497 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANK 531
                         *****99999**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.44878113IPR010399Tify domain
SMARTSM009799.5E-1278113IPR010399Tify domain
PfamPF062005.4E-1282112IPR010399Tify domain
PROSITE profilePS5101713.314146188IPR010402CCT domain
PfamPF062036.3E-16146188IPR010402CCT domain
PROSITE profilePS501148.906213271IPR000679Zinc finger, GATA-type
SMARTSM004017.7E-12213266IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-11216264No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14218259IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.27E-13219259No hitNo description
PfamPF003201.8E-13219255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
PROSITE profilePS5132012.378360395IPR010399Tify domain
SMARTSM009799.6E-7360395IPR010399Tify domain
PfamPF062002.0E-8363394IPR010399Tify domain
PROSITE profilePS5101712.759428470IPR010402CCT domain
PfamPF062031.3E-14428469IPR010402CCT domain
SMARTSM004014.6E-9491544IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-9492535No hitNo description
Gene3DG3DSA:3.30.50.105.9E-13495534IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.28E-11496547No hitNo description
PfamPF003202.1E-12497532IPR000679Zinc finger, GATA-type
PROSITE patternPS003440497524IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MPESNREASM YNSGAMNNNI ESHVEEEDED VAGDEESIDN PHMRFEDNAL AVKLNGGVQE  60
VATNSMYVPG SEFPPVAGNG GADQLTLSFQ GEVYVFDAVS PDKVQAVLLL LGGYEIPSVM  120
PTMGAAPLNL RVGMNDFPGR SIQPQRAASL SRFREKRKER CFDKKIRYSV RKEVALRMQR  180
KKGQFTSSKA IADVVGSESS VLSGAQGSGQ DDSMQETLCT HCGISSKSTP MMRRGPAGPR  240
TLCNACGLKW ANKGVLRDLP KVSNVSVLDS SVKTIEQGDG DAIDSDAVTP AAAELVSSAN  300
GDNSAPLQAR PFEEPEDQLV LVPIEVEGGS EDEYLDGGAP HEAMNVVEEV EARVNSGSVL  360
KSRTSELTVA FEGEVYVFPA VTPEKVQAVL LLLGGCDIPD SVPSSQFLLQ QNSRGIGDTS  420
RGSKLSRRIA SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASL KGTYKAAAEN  480
GDSSDGTPSP ATILRRCQHC GISEKSTPAM RRGPAGPRSL CNACGLMWAN KDTSADIKPS  540
TMEPENCYAD EDEQGSLNDA KPVPLEFKNP STRSGEQDFM QTTEVVTDHL SIELENPSVD  600
LGDQETIDEL ANASGTEFEI PENFDEQVDI DVSNMGTDWP RS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826887.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL72e-72GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2I4F5G60.0A0A2I4F5G6_JUGRE; GATA transcription factor 19-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]