PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00014863-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 591aa    MW: 64813.6 Da    PI: 8.295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00014863-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-1659105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ede l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  WALNUT_00014863-RA  59 KGGWTAQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                         688*****************************.************986 PP
2Myb_DNA-binding62.77.5e-20111157148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++++++v+++G+  W++Ia+ ++ gR +kqc++rw+++l
  WALNUT_00014863-RA 111 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157
                         79******************************.*************97 PP
3Myb_DNA-binding52.89.4e-17163206146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT +E++ l +a++ +G++ W+ Iar ++ gRt++ +k++w++
  WALNUT_00014863-RA 163 KDAWTLDEELALMKAHRVHGNK-WAEIARVLP-GRTDNAIKNHWNS 206
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.52754105IPR017930Myb domain
SMARTSM007179.3E-1458107IPR001005SANT/Myb domain
PfamPF002492.0E-1459105IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-1460115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1961111IPR009057Homeodomain-like
CDDcd001676.68E-1262105No hitNo description
PROSITE profilePS5129433.805106161IPR017930Myb domain
SuperFamilySSF466891.8E-31108204IPR009057Homeodomain-like
SMARTSM007176.7E-19110159IPR001005SANT/Myb domain
PfamPF002492.9E-19111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-28112160IPR009057Homeodomain-like
CDDcd001671.18E-16113157No hitNo description
Gene3DG3DSA:1.10.10.601.2E-22161212IPR009057Homeodomain-like
SMARTSM007171.5E-15162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.258162212IPR017930Myb domain
PfamPF002491.6E-14163206IPR001005SANT/Myb domain
CDDcd001671.11E-11165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MAEVKLEECC LENKQSTAAS SSSVSEGSGS ATLKSPGTCS PAPTSPSNRR ATGPIRRAKG  60
GWTAQEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVAKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLDE ELALMKAHRV  180
HGNKWAEIAR VLPGRTDNAI KNHWNSSLKK KLDFYLATGK LPPIAKNSPQ NGSKDANRSS  240
ANKNLFVCSN KGSDSTAQSS SGTTDICKTN ENSKDQLVSS APPPDMGASS NPIPNSSADS  300
EYGECKAGSS NVDLSCSNSG SLPNFENSGI NSEQKIENCA INSEQKIENC GIINDQMFEK  360
YRINGETDED KVNGTPLPFE TPTYGSLYYE PPQLKSYIPL DVGLMNLCCI QHEYNPSSVV  420
SPISFFTPPC VKSSGLSMQS PESILKMAAE SFPNTPSILR KRRTEDQKHL HRSKVVKADE  480
ELVEDVVHAS DEQKKSKNNL EKSDSVDGSL CGSPTCHGNS IGEANIKAFN ASPPYRLRPK  540
RTAVFKSVEK QLEFTFDKEK RDSSTKSKEL SRKGSSPVTP DCSHAAKIGV T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831346.10.0PREDICTED: myb-related protein B-like
RefseqXP_018831347.10.0PREDICTED: myb-related protein B-like
RefseqXP_018831348.10.0PREDICTED: myb-related protein B-like
RefseqXP_018831349.10.0PREDICTED: myb-related protein B-like
RefseqXP_018831350.10.0PREDICTED: myb-related protein B-like
SwissprotQ6R0321e-163MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2I4FI710.0A0A2I4FI71_JUGRE; myb-related protein B-like
STRINGVIT_08s0007g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-157myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]